View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11837_high_29 (Length: 237)
Name: NF11837_high_29
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1624407 - 1624190
Alignment:
| Q |
1 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624407 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
1624308 |
T |
|
| Q |
101 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1624307 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttcta |
1624208 |
T |
|
| Q |
201 |
gaagtgttcaaggtggtt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1624207 |
gaagtgttcaaggtggtt |
1624190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1630382 - 1630161
Alignment:
| Q |
1 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630382 |
tgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
1630283 |
T |
|
| Q |
101 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1630282 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttcta |
1630183 |
T |
|
| Q |
201 |
gaagtgttcaaggtggttatac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1630182 |
gaagtgttcaaggtggttatac |
1630161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1607386 - 1607169
Alignment:
| Q |
1 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607386 |
tgtggtggcaaaagatggttctggacagtacaagactgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
1607287 |
T |
|
| Q |
101 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1607286 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttcta |
1607187 |
T |
|
| Q |
201 |
gaagtgttcaaggtggtt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1607186 |
gaagtgttcaaggtggtt |
1607169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10819897 - 10820114
Alignment:
| Q |
1 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
10819897 |
tgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtg |
10819996 |
T |
|
| Q |
101 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttcta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
10819997 |
aagaaaggtgtttataaagagaacattgaggttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttcta |
10820096 |
T |
|
| Q |
201 |
gaagtgttcaaggtggtt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10820097 |
gaagtgttcaaggtggtt |
10820114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18785433 - 18785216
Alignment:
| Q |
1 |
tgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785433 |
tgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtg |
18785334 |
T |
|
| Q |
101 |
aagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttcta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18785333 |
aagaaaggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttcta |
18785234 |
T |
|
| Q |
201 |
gaagtgttcaaggtggtt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18785233 |
gaagtgttcaaggtggtt |
18785216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 12803590 - 12803497
Alignment:
| Q |
41 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
134 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg |
12803497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University