View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_3 (Length: 817)
Name: NF11837_high_3
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 253 - 802
Target Start/End: Original strand, 49758174 - 49758722
Alignment:
| Q |
253 |
cttgacttgttttgaatcaaattagatatatatatcagatgagatttatatacgtctggcagcaaaataagcagcactcgccggtcaagggaagaagatg |
352 |
Q |
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| T |
49758174 |
cttgacttgttttggatcaaattagatatatatatcagatgagatttatatacgtctggcagcaaaataagcagcactcgccggtcaagggaagaagatg |
49758273 |
T |
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| Q |
353 |
caattttttgtaatatttgtagtataacgtcatatttaccaacttattattgtgaaatgcagttctatttttattgggtaaacacttattgagattgtct |
452 |
Q |
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| T |
49758274 |
caattttttgtaatatttgtagtataacgtcatatttaccaacttattattgtgaaatgcagttctatttttattgggtaaacactttttgagattgtct |
49758373 |
T |
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| Q |
453 |
aaacctcaattgtcttggccattaattcagaatagataatttcgttgattcatttactttaccccctcctaaggcatggtacacgcaaactgaattgagt |
552 |
Q |
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| T |
49758374 |
aaacctcaattgtcttggccattaattcagaatagataatttcgttgattcatttacttta-cccctcctaaggcatggtacacgcaaactgaattgagt |
49758472 |
T |
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| Q |
553 |
agacaaccattttctgctggccaaaatagagtatatgtttcaggagcctcaaagagagcgggatgatggatcaattagaattctatccctttttcttagg |
652 |
Q |
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| T |
49758473 |
agacaacctttttctgctggcgaaaatagagtatatgtttcaggagcctcaaagagagcggtatgatggatcaattagaattctatccctttttcttagg |
49758572 |
T |
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| Q |
653 |
ccttcatcaattagtaagtcaaccaatttaacctggataccgcgagtttnnnnnnnnntaatcaaccatttcatcttcatctaggacaatgggacgactc |
752 |
Q |
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| T |
49758573 |
ccttcatcaattagtaagtcaaccaatttaacctggataccgcgagttttaaaaaaaataatcaaccaattcatcttcatctaggacaatgggacgactc |
49758672 |
T |
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| Q |
753 |
catattgaaggcataacttgtgccggcattcaaatgtcttctcatatttt |
802 |
Q |
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| T |
49758673 |
catattgaaggcataacttgtgccggcattcaaatgtcttttgatatttt |
49758722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 49757932 - 49758110
Alignment:
| Q |
11 |
cacagaggatgatccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctcta |
110 |
Q |
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| T |
49757932 |
cacagaggatgatccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctcta |
49758031 |
T |
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| Q |
111 |
atggtcgctgatttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
189 |
Q |
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| T |
49758032 |
atggtcgctgatttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
49758110 |
T |
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