View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_9 (Length: 522)
Name: NF11837_high_9
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Original strand, 40303293 - 40303788
Alignment:
| Q |
11 |
cagagatgtgatgctacttgaacttccaaaagggacttaaaagctgttgtcagtataagttgtttttcacaagaatttctagcaagacagactgaaacac |
110 |
Q |
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| T |
40303293 |
cagagatgtgatgctacttgaacttccaaaagggacttaaaagctgttgtcagtataagttgtttttcacaagaatttctagcaagacagactgaaacac |
40303392 |
T |
|
| Q |
111 |
agatctttctaacacatcaataaatagggcaaagaacctcacatgcagtcattggtcaagaaagtaaaaagcaatgatactttaattggattatttggct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40303393 |
agatctttctaacacatcaataaatagggcaaagaacctcacatgcagtcattggtcaagaaagtaaaaagcaatgatactttaattggattatttggct |
40303492 |
T |
|
| Q |
211 |
taatcacggtttcaactttccagtaaaaataataaattataagaaccccaggatcaaattcattgggataggaaagccaaccttcaaatggatttttcct |
310 |
Q |
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| T |
40303493 |
taatcacggtttcaactttccagtaaaaataataaattataagaaccccaggatcaaattcattgggataggaaagccaaccttcaaatggatttttcct |
40303592 |
T |
|
| Q |
311 |
tttctttgattcttgaacatcatctgccactgaattctctaactcatcaacatccactggaataacaaaattgttttttccatcttcttcagtatgctta |
410 |
Q |
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| T |
40303593 |
tttctttgattcttgaacatcatctgccactgaattctctaactcatcaacatccactggaataacaaaatcgttttttccatcttcttcagtatgctta |
40303692 |
T |
|
| Q |
411 |
aacatttccaaaatcaccttatcatctgtggttgcaccctttctctcttcttcaatttgtttgacatttccaaccttatcccttgtcggtaccctc |
506 |
Q |
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| T |
40303693 |
aacatttccaaaatcaccttatcatctgtggttgcaccctttctctcttcttcaatttgtttgacatttccaacctcatcccttgtcggtaccctc |
40303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 290 - 506
Target Start/End: Original strand, 8048068 - 8048284
Alignment:
| Q |
290 |
accttcaaatggatttttccttttctttgattcttgaacatcatctgccactgaattctctaactcatcaacatccactggaataacaaaattgtttttt |
389 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||| ||| |
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| T |
8048068 |
accttcaaatggagttttcctattccttgattcttgaacatcatctgccactgaattttctaactcatcaacatccaatggaataacaaagtcgttattt |
8048167 |
T |
|
| Q |
390 |
ccatcttcttcagtatgcttaaacatttccaaaatcaccttatcatctgtggttgcaccctttctctcttcttcaatttgtttgacatttccaaccttat |
489 |
Q |
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| T |
8048168 |
ctatcttcttcagtatgcttaaacatttccaaaatcaccttatcatctgtggttgcaccctttatgtcttcttcaatttgtttgacacttccaacctcat |
8048267 |
T |
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| Q |
490 |
cccttgtcggtaccctc |
506 |
Q |
| |
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| || |||||||||||| |
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| T |
8048268 |
cactcgtcggtaccctc |
8048284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 506
Target Start/End: Complemental strand, 31635235 - 31635134
Alignment:
| Q |
407 |
cttaaacatttccaaaatcaccttatcatctgtggttgcac--cctttctctcttcttcaatttgtttgacatttccaaccttatcccttgtcggtaccc |
504 |
Q |
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||||||||||||| ||||||||| ||||||| ||||||||| |||| || ||||||||||||||||||||| ||||||||| ||| || |||||||||| |
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| T |
31635235 |
cttaaacatttcccaaatcacctcatcatctatggttgcacacccttcctgtcttcttcaatttgtttgacacttccaacctcatcactcgtcggtaccc |
31635136 |
T |
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| Q |
505 |
tc |
506 |
Q |
| |
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|| |
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| T |
31635135 |
tc |
31635134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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