View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_11 (Length: 454)
Name: NF11837_low_11
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 14229203 - 14229627
Alignment:
| Q |
15 |
aaaacaacatgactagctctccaaagatttaaataaggtctacccggtgcagacagttacccaattctttgacactgaaatatataaattatattttcag |
114 |
Q |
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| T |
14229203 |
aaaactacataactaactctccaaagacttaaataagcgctaccggg-gcagacaattacccaatt---tgacactgaaatatataaattatattttcag |
14229298 |
T |
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| Q |
115 |
ctttcacacacgggatgtaatgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataa |
214 |
Q |
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| T |
14229299 |
ctatcacacacgagatcgaatgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatatga |
14229398 |
T |
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| Q |
215 |
gtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcacaatgtacaagaagtacgttgaggagccg |
314 |
Q |
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| T |
14229399 |
gtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcacaatgtacaagaagtacgttgaggagccg |
14229498 |
T |
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| Q |
315 |
ataattacaagaataaagatctatgaactaggaa-tcagccccaaacacttcaaaactacagacaataaaacaaatgcatccttcatcatcttgtgctag |
413 |
Q |
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| T |
14229499 |
ataattacaagaataaaggtctatgaactaggaagtcagccccaaacacctcaaaactacagacaataaaacaaatgcatccttcatcatcttgtgctag |
14229598 |
T |
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| Q |
414 |
acaataagagataaatgcaaaccaattca |
442 |
Q |
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| T |
14229599 |
acaataggagataaatgcaaaccaattca |
14229627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 14223790 - 14223917
Alignment:
| Q |
135 |
tgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataagtgacttgtgaaagtttagt |
234 |
Q |
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| T |
14223790 |
tgaaaaacaactatgcatgtttatatatagccttaagcctcatctcatctctcatactagcaatgtgggactaaatataagtgaattgtgaaactttagt |
14223889 |
T |
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| Q |
235 |
caccactcgccaaattgagttccaaaat |
262 |
Q |
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| T |
14223890 |
caccactcgccaaattcagtttcaaaat |
14223917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 14226521 - 14226656
Alignment:
| Q |
152 |
tgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattg |
251 |
Q |
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| T |
14226521 |
tgtttatatacaggcttcagcctcatctcatctctcatattggcgatgtgggactaattatgagtgacttttgaaactttagtcaccactcgccaaattc |
14226620 |
T |
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| Q |
252 |
agttccaaaatcattgttacacacatccactgcaca |
287 |
Q |
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| T |
14226621 |
agctcaaaaatcattgttatacacatccactgcaca |
14226656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 14219215 - 14219360
Alignment:
| Q |
84 |
tgacactgaaatatataaattatattttcagctttcacacacgggatg--taatgaacaacaactatgcatgtttatatatagccttgagcctcatctca |
181 |
Q |
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| T |
14219215 |
tgacactgaattatatatattataccttcagcttttacacatgagatggtttacgaccaacagctatgcatgtttatatatagccttaagtctcatctca |
14219314 |
T |
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| Q |
182 |
tctctcatactagcgatgtgggactaaatataagtgacttgtgaaa |
227 |
Q |
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| T |
14219315 |
tatctcatactagcgatgtgggactaaatatgagtgacttgtgaaa |
14219360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 14221183 - 14221276
Alignment:
| Q |
194 |
gcgatgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcaca |
287 |
Q |
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|||||||||||||||| | |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
14221183 |
gcgatgtgggactaaagacgagtgacgtgtgaaacttttgtcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcaca |
14221276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 14219552 - 14219630
Alignment:
| Q |
318 |
attacaagaataaagatctatgaactaggaatcagccccaaacacttcaaaactacagacaataaaacaaatgcatcct |
396 |
Q |
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| T |
14219552 |
attacaagaataaacgtctatggactaggaatcagccccaaacacctcaaagctacagacaacaaataaaatgcatcct |
14219630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 14230874 - 14230957
Alignment:
| Q |
197 |
atgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatcca |
280 |
Q |
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| T |
14230874 |
atgtgggactaagtttgagtgacttgtcaaactttagtcatcactcgccaaattatgctccaaaataattttttcacacatcca |
14230957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 14221963 - 14222101
Alignment:
| Q |
152 |
tgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaa---atataagtgacttgtgaaagtttagtcaccactcgccaaa |
248 |
Q |
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| T |
14221963 |
tgtttatatataggcttaa-cctcatctcatctctcatattgaagatgtgggactaatttgtatgagtgacttgtaaaactttaatcaccacttgccaaa |
14222061 |
T |
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| Q |
249 |
ttgagttccaaaatc-attgttacacacatccactgcaca |
287 |
Q |
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| T |
14222062 |
ttcaactacaaaatcttttgttttacacatccactgcaca |
14222101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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