View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_12 (Length: 445)
Name: NF11837_low_12
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 18320944 - 18320530
Alignment:
| Q |
17 |
acaaggaactgtcgaaagcaacttgtaagttcagtaaagaaaatcttgtgggaagaggtggatttggaagtgtttataaaggcttcatgttggaaaatgg |
116 |
Q |
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| T |
18320944 |
acaaggaactgtcgaaagcaacttgtaagttcagtaaagaaaatcttgtgggaagaggtggatttggaagtgtttataaaggcttcatgttggaaaatgg |
18320845 |
T |
|
| Q |
117 |
aaaaaccatagcagtaaagaaaatttcagccacgtctaagcaaggtatgttctggtaactggtaaaaaactacgacatgaaaatattttggaacttgaat |
216 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18320844 |
aaaaaccatagcagtaaagaaaatttcagcaacctctaagcaaggtatgttctggtaactggtaaaaaactacgacatgaaaatattttggaacttgaat |
18320745 |
T |
|
| Q |
217 |
agaattaaacccgtgtctattcggaaatatcacaagtcgtacatcgcctatatatttgacctaaatagaactgataccaatcattgcaccaccatgcatt |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18320744 |
agaattaaacctgtgtctattcggaaatatcacaagtcgtacatcgcctatatatttgacctaaatagaactgataccaatcattgcaccaccgtgcatc |
18320645 |
T |
|
| Q |
317 |
aagaccaatatacctagtcgtgagggggtttattggagaaaatttgttgatgatgaagtaaatttttcgcattgaaagtccaatataccaagtccacatg |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18320644 |
aagaccaatatacctagtcatgagggggtttattggagaaaatttgttgatgatgaagtaaatttttcccattgaaagtccaatataccaagtccacatg |
18320545 |
T |
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| Q |
417 |
ctccttatctgtgct |
431 |
Q |
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||||||||||||||| |
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| T |
18320544 |
ctccttatctgtgct |
18320530 |
T |
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