View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_13 (Length: 443)
Name: NF11837_low_13
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46998364 - 46998588
Alignment:
| Q |
1 |
tctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaa |
100 |
Q |
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| T |
46998364 |
tctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgcagataacatgctaa |
46998463 |
T |
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| Q |
101 |
tatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaaggagtgttcat |
200 |
Q |
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| T |
46998464 |
tatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaaggagtgttcat |
46998563 |
T |
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| Q |
201 |
ttttcagatggcaaaaggacacaga |
225 |
Q |
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| T |
46998564 |
ttttcagatggcaaaaggacacaga |
46998588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 46998619 - 46998782
Alignment:
| Q |
266 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgataaataaatacaatatgaacgaccgtgctg |
365 |
Q |
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| T |
46998619 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgacaaataaatacaatatgaacgaccgtgccg |
46998718 |
T |
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| Q |
366 |
cacgctcccacaatcgacaaatacaatattg-tttgtactatgataatacaatatggtccttca |
428 |
Q |
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| T |
46998719 |
cacgctcccacaatcgacagatacaatattgttttgtactatgataatacaatatggttcttca |
46998782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 47002008 - 47002169
Alignment:
| Q |
51 |
ttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
150 |
Q |
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| T |
47002008 |
ttttttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
47002107 |
T |
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| Q |
151 |
catggtttgataaaacattcagaaacaaggtttagagaaggagtgttcatttttcagatggc |
212 |
Q |
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| T |
47002108 |
tatggtttgatgaaacattcagaaacaaggtttagagaaggagtattcatttttcagatggc |
47002169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 46981291 - 46981478
Alignment:
| Q |
4 |
accaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatat |
103 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||| | || ||||||||| ||||| |
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| T |
46981291 |
accaggttctctatgaaatgttgttggtttagtgatgatgatgttggttttttgaagataagtcccttttggttataatgtgtagataacatggcaatat |
46981390 |
T |
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| Q |
104 |
cccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaagg |
191 |
Q |
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| T |
46981391 |
cccaatgtgttaaataacatatttgatttgagtctttgattgtgggataaggtttaataaaacatgaagaaacgatgtttagggaagg |
46981478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 46975309 - 46975488
Alignment:
| Q |
9 |
gttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaa |
108 |
Q |
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| T |
46975309 |
gttctcaatgaagtgttgttggtttagtgat---gatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaa |
46975405 |
T |
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| Q |
109 |
ggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaacaaggtttagagaagg |
191 |
Q |
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| T |
46975406 |
tgtgttagatagcatatttggtttgagtctttgatagggggataaggtttaataaaacatgcagaaacaatgtttagggaagg |
46975488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 46996119 - 46996276
Alignment:
| Q |
16 |
atgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgctgataacatgctaatatcccaaggtccta |
115 |
Q |
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| T |
46996119 |
atgaaatgctgttggtttagtgatgaag---ttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgcta |
46996215 |
T |
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| Q |
116 |
aatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaac |
176 |
Q |
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| T |
46996216 |
aatagcaaatttgctttgagtcttcaattggaggataaggtttgataaagcattcagaaac |
46996276 |
T |
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