View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_14 (Length: 441)
Name: NF11837_low_14
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 53621636 - 53621875
Alignment:
| Q |
22 |
ataataccacagggaattataagctatttagcgtttgcccaagccatgctattttgctcacaatgtattttgagcaactttaggcaaatactgatgaatg |
121 |
Q |
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| T |
53621636 |
ataataccacagggaattataagctatttagcgtttgcccaagccatgctattttgctcacaatgtattttgagcaactttaggcaaatactgatgaatg |
53621735 |
T |
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| Q |
122 |
acaaactgactcaaaataattataagctatatacattgattgtatatcgaaaatatttttatgacttgaaatatccaatttttatcattgttttaccttc |
221 |
Q |
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| T |
53621736 |
acaaactgactcaaaataattataagctatatacattgattgtatatcgaaaatatttttatgacttgaaatatccaatttttatcattgttttaccttc |
53621835 |
T |
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| Q |
222 |
aaaactgtccagtgggatagggtttgtcttttaatgttga |
261 |
Q |
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| T |
53621836 |
aaaactgtccagtgggatagggtttgtcttctaatgttga |
53621875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 298 - 441
Target Start/End: Original strand, 53621912 - 53622055
Alignment:
| Q |
298 |
ctaattctaataattacttctatgatcaggtgctgataatttgattcctatggagttggcgctgaagattgtcagtaagatcagatctcgggagagattt |
397 |
Q |
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| T |
53621912 |
ctaattctaataattacttctatgatcaggtgctgataatttgattcctatggagttggcgctgaagattgtcagtaagatcagatctcgggagagattt |
53622011 |
T |
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| Q |
398 |
acagtttatattgtcattccaatgtggcctgaaggcgtcccttc |
441 |
Q |
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| T |
53622012 |
acagtttatattgtcattccaatgtggcctgaaggcgtcccttc |
53622055 |
T |
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