View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_22 (Length: 291)
Name: NF11837_low_22
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 84 - 273
Target Start/End: Original strand, 13317346 - 13317534
Alignment:
| Q |
84 |
ttttcacattaaatataaacccgttatatattatgcaactaaaaagaaatgacgaaactacaataaacacattttaatctcttataatgtggcgaactaa |
183 |
Q |
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| T |
13317346 |
ttttcacattaaatatacacccgtta-atattatgcgactaaaaagaaatgacgaaactacaataaacacattttaatctcttgtaatgtggcgaactaa |
13317444 |
T |
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| Q |
184 |
tgttcaaatcctgatcacaatgtttaaatgataacgaaaattaaaggagaaaaagatacatgcacatgtggaattccaattgtgcacatt |
273 |
Q |
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| T |
13317445 |
tgttcaaatcctgatcacaatgtttaaatggtaacgaaaattaaaggagaaaaagatacatgcacatgtggaattccaattgtgcacatt |
13317534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13317226 - 13317318
Alignment:
| Q |
1 |
tttgctgccaataacattgaggtacataacctaacctcaactcatctggtttatttatttaaccatatagatacatgaaatatttttcacatt |
93 |
Q |
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| T |
13317226 |
tttgctgccaataacattgaggtacataacctaacctcaactcatctggtttatttatttaaccatatagatacatgaaatacttttcacatt |
13317318 |
T |
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