View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_24 (Length: 275)
Name: NF11837_low_24
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 4951901 - 4951672
Alignment:
| Q |
18 |
aagatttatgtgaaattccatgcaacacatctcaacataaagatgattcctctaaaattcatgattgagaatgagatgagactattttccagtttccatt |
117 |
Q |
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| T |
4951901 |
aagatttatgtgaaattccatgcaacacatctcaacacaaagatgattcctctaaaattcatgattgagaatgagatgagactattttctagtttccatt |
4951802 |
T |
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| Q |
118 |
ataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatattttacttgtccatattcattggacaagtatgagtt |
217 |
Q |
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| T |
4951801 |
ataaagatataaattactctatgttccttctttttaactttctatgatccatccacctgctatattttacttgtccatattcattggacaagtatgagtt |
4951702 |
T |
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| Q |
218 |
ttagaagcttatatatgaaataaaagcttta |
248 |
Q |
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| T |
4951701 |
ttagaagcatatatat-aaataaaagcttta |
4951672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 10483771 - 10483980
Alignment:
| Q |
18 |
aagatttatgtgaaattccatgcaacacatctcaacataaa---gatgattcctctaaaattcatgattgagaatgagatgagactattttccagtttcc |
114 |
Q |
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| T |
10483771 |
aagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgat------tgagatgacactattttcatgtttcc |
10483864 |
T |
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| Q |
115 |
attataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatattttacttgtccatattca-ttggacaagtatg |
213 |
Q |
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| T |
10483865 |
attataa--------------cgatgttgcttcttttaaattttctatgatcca--------------tttacttgtcc--attcatttggacaagtatg |
10483934 |
T |
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| Q |
214 |
agttttagaagcttatatatgaaataaaagctttagatgttgatgt |
259 |
Q |
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| T |
10483935 |
agttttagaagcataaatatgaaataaaagctttagatattgatgt |
10483980 |
T |
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