View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_28 (Length: 240)
Name: NF11837_low_28
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_28 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 46998139 - 46998361
Alignment:
| Q |
18 |
ctgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctc |
117 |
Q |
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| T |
46998139 |
ctgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctc |
46998238 |
T |
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| Q |
118 |
caagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgt |
217 |
Q |
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| T |
46998239 |
cgagactgtttttgcaatcaacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgt |
46998338 |
T |
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| Q |
218 |
gagggaaagggagtgtttcagtt |
240 |
Q |
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| T |
46998339 |
gagggaaagggagtgtttcagtt |
46998361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 46995891 - 46996113
Alignment:
| Q |
18 |
ctgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctc |
117 |
Q |
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| T |
46995891 |
ctgtgatggtcaaagaatgaatgaacaatgggtgggacatcaattggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctc |
46995990 |
T |
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| Q |
118 |
caagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgt |
217 |
Q |
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| T |
46995991 |
cgagactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgt |
46996090 |
T |
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| Q |
218 |
gagggaaagggagtgtttcagtt |
240 |
Q |
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| T |
46996091 |
gagggaaagggagtgtttgagtt |
46996113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 46981072 - 46981285
Alignment:
| Q |
27 |
tcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgt |
126 |
Q |
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| T |
46981072 |
tcaaagaacgaatggacaatgggtgggacatcaatgggggtgaggatatcatttatggtgatatctaaagttgcatgaataaatttagctccgggactgt |
46981171 |
T |
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| Q |
127 |
ttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaag |
226 |
Q |
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| T |
46981172 |
ttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaag |
46981271 |
T |
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| Q |
227 |
ggagtgtttcagtt |
240 |
Q |
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| T |
46981272 |
ggagtgtttcagtt |
46981285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 46975085 - 46975298
Alignment:
| Q |
27 |
tcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgt |
126 |
Q |
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| T |
46975085 |
tcaaagaacgattggacaatgggtgggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgt |
46975184 |
T |
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| Q |
127 |
ttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaag |
226 |
Q |
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| T |
46975185 |
ttttgcaatcaacgaaaacagtgtaagaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaag |
46975284 |
T |
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| Q |
227 |
ggagtgtttcagtt |
240 |
Q |
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| T |
46975285 |
agagtgtttgagtt |
46975298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 47001831 - 47001998
Alignment:
| Q |
18 |
ctgtggtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctc |
117 |
Q |
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| T |
47001831 |
ctgtggtggtcaaagaacgatttaactatgggtgggacatcaacaggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctc |
47001930 |
T |
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| Q |
118 |
caagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagattttttagtaacaaga |
185 |
Q |
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| T |
47001931 |
ctcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcagatttttgagtaacaaga |
47001998 |
T |
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