View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11837_low_29 (Length: 240)

Name: NF11837_low_29
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11837_low_29
NF11837_low_29
[»] chr2 (5 HSPs)
chr2 (1-224)||(36242527-36242764)
chr2 (3-112)||(6458287-6458402)
chr2 (3-41)||(16567069-16567107)
chr2 (3-41)||(18666071-18666109)
chr2 (5-65)||(40053828-40053888)
[»] chr4 (3 HSPs)
chr4 (3-110)||(45413042-45413155)
chr4 (3-65)||(2183997-2184059)
chr4 (1-65)||(35075165-35075229)
[»] chr1 (3 HSPs)
chr1 (1-119)||(30210195-30210319)
chr1 (3-66)||(6768962-6769025)
chr1 (3-48)||(50004254-50004299)
[»] chr3 (1 HSPs)
chr3 (1-65)||(40417658-40417722)
[»] chr5 (2 HSPs)
chr5 (4-59)||(7010127-7010182)
chr5 (3-60)||(23259801-23259858)
[»] chr8 (2 HSPs)
chr8 (3-65)||(31735022-31735084)
chr8 (4-41)||(7548773-7548810)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36242527 - 36242764
Alignment:
Q  1 tcttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc-tatcttt----------ttatcctattatgtgtc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||| |||| |||||||    
T  36242527 tcttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatcatatctttatccatccttttattctatcatgtgtc 36242626  T
Q  90 tgtcatatcaggtgcaccaaacgaaccgttacatatattatttatactgccacatcatcataa---cgtagttaatgtcacaagtagccatacacgaaca 186  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  36242627 agtcatatcaggtgcaccaaacgaaccgttacatatattatttatactgccacgtcatcataataacgtagttaatgtcacaagtagccatacacgaaca 36242726  T
Q  187 aaaatgaacatgcttttgttttgccacatcagtatttt 224  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36242727 aaaatgaacatgcttttgttttgccacatcagtatttt 36242764  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 6458287 - 6458402
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatca------tatctatctttttatcctattatgtgtctgtcata 96  Q
    |||||||||||||| |||||||||||||  ||||||||||| | |||| | ||||||||      |||| ||||| ||||||||| |||||| | | |||    
T  6458287 ttatcatgtgtgcaccaaacatgtgataggataaatgttataaagtcattatcatatcatatccttatccatcttcttatcctatcatgtgtttataata 6458386  T
Q  97 tcaggtgcaccaaacg 112  Q
    ||| ||||||||||||    
T  6458387 tcatgtgcaccaaacg 6458402  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 16567107 - 16567069
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgtt 41  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  16567107 ttatcatgtgtgcatcaaacatgtgatatgataaatgtt 16567069  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 18666071 - 18666109
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgtt 41  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  18666071 ttatcatgtgtgcatcaaacatgtgataggataaatgtt 18666109  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 40053888 - 40053828
Alignment:
Q  5 atcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc 65  Q
    |||||||||||| |||||||||||||  |||| ||||||| |||  || ||||||||||||    
T  40053888 atcatgtgtgcaccaaacatgtgataggataattgttatcttgttgctatcatatcatatc 40053828  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45413155 - 45413042
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatct------atctttttatcctattatgtgtctgtcata 96  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||| |||||| ||||||      ||||| ||||||||| |||||| | || ||    
T  45413155 ttatcatgtgtgcatcaaacatatgataagataaatgttatcaggtcactatcatattatatctttatccatcttcttatcctatcatgtgtttatccta 45413056  T
Q  97 tcaggtgcaccaaa 110  Q
    ||| ||||||||||    
T  45413055 tcatgtgcaccaaa 45413042  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 2183997 - 2184059
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc 65  Q
    |||||||||||||| |||||||||||||| ||||||||||| | |||| | ||||||||||||    
T  2183997 ttatcatgtgtgcaccaaacatgtgataagataaatgttataaggtcattatcatatcatatc 2184059  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35075165 - 35075229
Alignment:
Q  1 tcttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc 65  Q
    |||||||||||||| | ||||||||| |||  ||||||||||| |||||||| ||||||| ||||    
T  35075165 tcttatcatgtgtgtaccaaacatgtaataggataaatgttattatgtcactatcatatcctatc 35075229  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30210195 - 30210319
Alignment:
Q  1 tcttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatct------atctttttatcctattatgtgtctgtca 94  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||| | |||||||||||||      |||| |||||||||| |||| | | ||     
T  30210195 tcttatcatgtgtgtatcaaacaagtgataggataaatgttatcatgtcattatcatatcatatctttatccatctctttatcctatcatgtctttatcc 30210294  T
Q  95 tatcaggtgcaccaaacgaaccgtt 119  Q
    ||||| |||||||||| ||||||||    
T  30210295 tatcatgtgcaccaaatgaaccgtt 30210319  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 6768962 - 6769025
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatct 66  Q
    |||||||||||||| |||||||||||||  ||||| ||||||| |||||| |||||||||||||    
T  6768962 ttatcatgtgtgcaccaaacatgtgataggataaacgttatcaagtcactatcatatcatatct 6769025  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 50004299 - 50004254
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgt 48  Q
    |||||||||||||| ||||||| |||||  ||||||||||||||||    
T  50004299 ttatcatgtgtgcaccaaacatatgataggataaatgttatcatgt 50004254  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40417658 - 40417722
Alignment:
Q  1 tcttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc 65  Q
    |||||||||| ||||| ||||||| |||||  |||||||||||||||||||||||||||| ||||    
T  40417658 tcttatcatgcgtgcaccaaacatatgatatgataaatgttatcatgtcactgtcatatcctatc 40417722  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7010182 - 7010127
Alignment:
Q  4 tatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatat 59  Q
    ||||||||||||| |||||| ||||||  |||||||||||||||||||| ||||||    
T  7010182 tatcatgtgtgcaccaaacaggtgataggataaatgttatcatgtcactatcatat 7010127  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 23259801 - 23259858
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatc 60  Q
    |||||||||| ||||||||||  |||||| |||||||||||||||||  |||||||||    
T  23259801 ttatcatgtgagcatcaaacacatgataagataaatgttatcatgtccatgtcatatc 23259858  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 31735022 - 31735084
Alignment:
Q  3 ttatcatgtgtgcatcaaacatgtgataatataaatgttatcatgtcactgtcatatcatatc 65  Q
    ||||||||| |||| |||||||||||||  |||| |||||| |||| ||| ||||||||||||    
T  31735022 ttatcatgtatgcaccaaacatgtgataggataagtgttatgatgtaactatcatatcatatc 31735084  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 7548773 - 7548810
Alignment:
Q  4 tatcatgtgtgcatcaaacatgtgataatataaatgtt 41  Q
    |||||||||||||||||||||||||||  |||||||||    
T  7548773 tatcatgtgtgcatcaaacatgtgatatgataaatgtt 7548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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