View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_low_4 (Length: 673)
Name: NF11837_low_4
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 656
Target Start/End: Original strand, 42820807 - 42821445
Alignment:
| Q |
18 |
aacaagatacagacatgttagctgaatttgggaacacttgaaatgagaagacgatgaagaatgacggtttgcctaagtttctcctgaaaataatttcggt |
117 |
Q |
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| T |
42820807 |
aacaggatacagacatgttagctgaatttgggaacacttgaaattagaagacgatgaagaatgacggtttgcctaagtttctcctgaaaataatttcggt |
42820906 |
T |
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| Q |
118 |
tagtagcactaattctgttgtacagttgactaattggtatctgtcatttatcagttgttaattgttataatgaatatcaaccacttaaaattttgtcagt |
217 |
Q |
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| T |
42820907 |
tagtagcactaattctgttgtacagttgactaattggtatctgtcatttatcagttgttaattgttataatgaatatcaaccacttaaaattttgtcagt |
42821006 |
T |
|
| Q |
218 |
ttggggatatttgctcattaaattatctacttataaattgaagttcctctgtagtatattatagagtagtaaattgaattctctatagttgagagcaaat |
317 |
Q |
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| T |
42821007 |
ttggggatatttgctcattaaattatctacttataaattgaagttcctctgtagtatattatagagtagtaaattgaattctctatagttgagagcaaat |
42821106 |
T |
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| Q |
318 |
cctcttccatggcttcaattgccaaaaggtatattatagagtagttctttaaactttatatttgtatgaatcaaatctgaaataattaatagtattagta |
417 |
Q |
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| T |
42821107 |
cctcttccatggcttcaattgccaaaaggtatattatagagtagttcattaaactttatatttgtatgaatcaaatctgaaataattaatagtattagta |
42821206 |
T |
|
| Q |
418 |
aattgaatatttgcgcaggcttcaaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaactatttgttcaacatggt |
517 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
42821207 |
aattgaatatttgcgcaggcttgaaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaacaatttgttcaaaatggt |
42821306 |
T |
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| Q |
518 |
gctaaagttatcattgcagatattcaagacgaattaggccaatctctttgcaatgaacttggcacaaagaacattctctatgttcactgcaatgtaacca |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||| ||||||| | |
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| T |
42821307 |
gctaaagttatcattgcagatattcaagacgaattaggccaatctctttgcaaaaatcttggcacaaagaacattctttgtgttcactgcgatgtaacta |
42821406 |
T |
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| Q |
618 |
ctgaatcagacataaaaaacgtggttgataccgcagttt |
656 |
Q |
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|||||||||||| |||| ||||||||||| |||||||| |
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| T |
42821407 |
ttgaatcagacatcaaaaccgtggttgatatcgcagttt |
42821445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 427 - 656
Target Start/End: Original strand, 42824854 - 42825083
Alignment:
| Q |
427 |
tttgcgcaggcttcaaggtaaagtagcaataatcactggaggtgctagtggcattggtgcagctactgctaaactatttgttcaacatggtgctaaagtt |
526 |
Q |
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|||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42824854 |
tttgtgcaggcttgaaggtaaagtagcaataatcacaggaggtgctagtggaattggtgcagctactgctaaactatttgttcaacatggtgctaaagtt |
42824953 |
T |
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| Q |
527 |
atcattgcagatattcaagacgaattaggccaatctctttgcaatgaacttggcacaaagaacattctctatgttcactgcaatgtaaccactgaatcag |
626 |
Q |
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| T |
42824954 |
atcattgcagatattcaagatgaagtaggtcaatccctttgcaatgaacttggcccaaagaacattctctatgttcactgcaatgtaaccactgaatcag |
42825053 |
T |
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| Q |
627 |
acataaaaaacgtggttgataccgcagttt |
656 |
Q |
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| T |
42825054 |
acataaaaaatgtggttgataccgcagttt |
42825083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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