View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11837_low_5 (Length: 657)

Name: NF11837_low_5
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11837_low_5
NF11837_low_5
[»] chr1 (8 HSPs)
chr1 (6-547)||(46844350-46844892)
chr1 (564-641)||(46844044-46844121)
chr1 (564-641)||(46847944-46848018)
chr1 (538-571)||(1036005-1036038)
chr1 (542-571)||(6283528-6283557)
chr1 (543-571)||(639917-639945)
chr1 (543-571)||(8258061-8258089)
chr1 (544-572)||(37539645-37539673)
[»] chr7 (1 HSPs)
chr7 (532-571)||(8571365-8571404)
[»] scaffold0057 (1 HSPs)
scaffold0057 (181-238)||(48929-48986)
[»] chr6 (2 HSPs)
chr6 (540-571)||(31398217-31398248)
chr6 (538-571)||(6560775-6560808)
[»] chr2 (2 HSPs)
chr2 (528-571)||(19950096-19950139)
chr2 (543-571)||(3887951-3887979)
[»] chr5 (3 HSPs)
chr5 (541-571)||(25772146-25772176)
chr5 (542-571)||(1996840-1996869)
chr5 (543-571)||(26141873-26141901)
[»] chr4 (1 HSPs)
chr4 (542-571)||(52817685-52817714)
[»] chr3 (2 HSPs)
chr3 (542-571)||(8439376-8439405)
chr3 (543-571)||(25881254-25881282)


Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 6 - 547
Target Start/End: Complemental strand, 46844892 - 46844350
Alignment:
Q  6 gagaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgttt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46844892 gagaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgttt 46844793  T
Q  106 aggtggaattatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcac 205  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  46844792 aggtggaattatgtcacatactcaatcatccttagcttccaatttaggcatctt--gtgctatataggcatcacgtcctccaacaacatcctctggtcac 46844695  T
Q  206 ggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46844694 ggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgg 46844595  T
Q  306 tctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacggcacatcaagattgttactagtttaaaaaatttgaa 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46844594 tctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacggcacatcaagattgttactagtttaaaaaatttgaa 46844495  T
Q  406 taacgttatcacatatgtccatgttgtgttagtgtctgacgtcaacatttttcgacccacggttggaccacaagagatgccttgtaacattactttctct 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46844494 taacgttatcacatatgtccatgttgtgttagtgtctgacgtcaacatttttcgacccacggttggaccacaagagatgccttgtaacattactttctct 46844395  T
Q  506 ttgacttcac---caccataagccaaatttttctaataaactaca 547  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  46844394 ttgacttcaccaacaccataagccaaatttttctaataaactaca 46844350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 564 - 641
Target Start/End: Complemental strand, 46844121 - 46844044
Alignment:
Q  564 ataagcaattacctgtacatgtagatgtctttaccctgctcaagattcttcttgcagtgaaaacatacactcagaaag 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46844121 ataagcaattacctgtacatgtagatgtctttaccctgctcaagattcttcttgcagtgaaaacatacactcagaaag 46844044  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 641
Target Start/End: Complemental strand, 46848018 - 46847944
Alignment:
Q  564 ataagcaattacctgtacatgtagatgtctttaccctgctcaagattcttcttgcagtgaaaacatacactcagaaag 641  Q
    |||||||||||||||||||||||||| ||||| |||||   |||| |||||||||| || ||||||| ||||| ||||    
T  46848018 ataagcaattacctgtacatgtagatatcttttccctg---aagactcttcttgcattggaaacatatactcaaaaag 46847944  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Complemental strand, 1036038 - 1036005
Alignment:
Q  538 ataaactacaccctccggtcactaatataagcaa 571  Q
    ||||| ||||||||||||||||||||||||||||    
T  1036038 ataaagtacaccctccggtcactaatataagcaa 1036005  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 571
Target Start/End: Original strand, 6283528 - 6283557
Alignment:
Q  542 actacaccctccggtcactaatataagcaa 571  Q
    ||||||||||||||||||||||||||||||    
T  6283528 actacaccctccggtcactaatataagcaa 6283557  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 571
Target Start/End: Complemental strand, 639945 - 639917
Alignment:
Q  543 ctacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||    
T  639945 ctacaccctccggtcactaatataagcaa 639917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 571
Target Start/End: Complemental strand, 8258089 - 8258061
Alignment:
Q  543 ctacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||    
T  8258089 ctacaccctccggtcactaatataagcaa 8258061  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 572
Target Start/End: Complemental strand, 37539673 - 37539645
Alignment:
Q  544 tacaccctccggtcactaatataagcaat 572  Q
    |||||||||||||||||||||||||||||    
T  37539673 tacaccctccggtcactaatataagcaat 37539645  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 571
Target Start/End: Original strand, 8571365 - 8571404
Alignment:
Q  532 tttctaataaactacaccctccggtcactaatataagcaa 571  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8571365 tttcttataaactacaccctccggtcactaatataagcaa 8571404  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 48929 - 48986
Alignment:
Q  181 tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc 238  Q
    ||||||||||   ||||||||| |||||||||| || |||||||||||||||||||||    
T  48929 tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc 48986  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 571
Target Start/End: Original strand, 31398217 - 31398248
Alignment:
Q  540 aaactacaccctccggtcactaatataagcaa 571  Q
    ||||||||||||||||||||||||||||||||    
T  31398217 aaactacaccctccggtcactaatataagcaa 31398248  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Complemental strand, 6560808 - 6560775
Alignment:
Q  538 ataaactacaccctccggtcactaatataagcaa 571  Q
    ||||| ||||||||||||||||||||||||||||    
T  6560808 ataaagtacaccctccggtcactaatataagcaa 6560775  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 571
Target Start/End: Original strand, 19950096 - 19950139
Alignment:
Q  528 aatttttctaataaactacaccctccggtcactaatataagcaa 571  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||    
T  19950096 aatttttcttataacttacaccctccggtcactaatataagcaa 19950139  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 571
Target Start/End: Complemental strand, 3887979 - 3887951
Alignment:
Q  543 ctacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||    
T  3887979 ctacaccctccggtcactaatataagcaa 3887951  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 571
Target Start/End: Original strand, 25772146 - 25772176
Alignment:
Q  541 aactacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||||    
T  25772146 aactacaccctccggtcactaatataagcaa 25772176  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 571
Target Start/End: Original strand, 1996840 - 1996869
Alignment:
Q  542 actacaccctccggtcactaatataagcaa 571  Q
    ||||||||||||||||||||||||||||||    
T  1996840 actacaccctccggtcactaatataagcaa 1996869  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 571
Target Start/End: Complemental strand, 26141901 - 26141873
Alignment:
Q  543 ctacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||    
T  26141901 ctacaccctccggtcactaatataagcaa 26141873  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 571
Target Start/End: Complemental strand, 52817714 - 52817685
Alignment:
Q  542 actacaccctccggtcactaatataagcaa 571  Q
    ||||||||||||||||||||||||||||||    
T  52817714 actacaccctccggtcactaatataagcaa 52817685  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 571
Target Start/End: Complemental strand, 8439405 - 8439376
Alignment:
Q  542 actacaccctccggtcactaatataagcaa 571  Q
    ||||||||||||||||||||||||||||||    
T  8439405 actacaccctccggtcactaatataagcaa 8439376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 571
Target Start/End: Complemental strand, 25881282 - 25881254
Alignment:
Q  543 ctacaccctccggtcactaatataagcaa 571  Q
    |||||||||||||||||||||||||||||    
T  25881282 ctacaccctccggtcactaatataagcaa 25881254  T

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