View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11837_low_7 (Length: 624)
Name: NF11837_low_7
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 280 - 612
Target Start/End: Complemental strand, 35524401 - 35524068
Alignment:
| Q |
280 |
cattttttactcaattcatctatatatgattgatcataaattatacagcaaatttt-attcaagactaaagtttgagctagagttgtattaattaccttc |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35524401 |
cattttttactcaattcgtctatatatgattgatcataaattatacaacaaatttttattcaagactaaagtttgagctagagttgtattaattaccttc |
35524302 |
T |
|
| Q |
379 |
tctcatatttagaactgctggatgtaaagtatactgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatg |
478 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35524301 |
tctcatatttagaactgctggaggtaaagtacactgctccagttcgttgatcaatatccaaactgtttgtgaaagccaacggttgaccttctactgcatg |
35524202 |
T |
|
| Q |
479 |
tgatatgacttttctagcaatgccgccggtggattcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcac |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35524201 |
tgatatgacttttctagcaatgccgccggtgggttcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcac |
35524102 |
T |
|
| Q |
579 |
agcccaagcgggcgcccacatacgtgctctttct |
612 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
35524101 |
agcccaagcgggcgcccacatatgtgctctttct |
35524068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 300 - 612
Target Start/End: Complemental strand, 35520792 - 35520479
Alignment:
| Q |
300 |
tatatatgattgatcataaattatac-agcaaattttattcaagactaaagtttgagctagagttgtattaattaccttctctcatatttagaactgctg |
398 |
Q |
| |
|
||||||||| |||||| ||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520792 |
tatatatgactgatcacaaattatactaacaaattttattcaagattaaagtttgagctagagttgtattaattaccttctctcatatttagaactgctg |
35520693 |
T |
|
| Q |
399 |
gatgtaaagtatactgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatgtgatatgacttttctagcaa |
498 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520692 |
gatgtaaagtacactgctccagttcgttgatcaatatccaaactgtttgtgaaagctaaaggttgaccttctactgcatgtgatatgacttttctagcaa |
35520593 |
T |
|
| Q |
499 |
tgccgccggtggattcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccaca |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35520592 |
tgccgccggtggattcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcggacgcccaca |
35520493 |
T |
|
| Q |
599 |
tacgtgctctttct |
612 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
35520492 |
tatgtgttctttct |
35520479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 35524651 - 35524537
Alignment:
| Q |
48 |
gcatattttagttcactcttggatgagtccaaattgaatataaataataaatgtgtataattgttttgacatgtttgcgtgtttcataataattaatttt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35524651 |
gcatattttagttcactcttggatgagtccaaatcgaatataaataatgaatgtgtataattgttttgacatgtttgtgtgtttcataataattaatttt |
35524552 |
T |
|
| Q |
148 |
gactttataattgag |
162 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35524551 |
gactttataattgag |
35524537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 35524489 - 35524444
Alignment:
| Q |
230 |
aaacttacttttacttgatgtatccaaaatataaaccacttttaca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35524489 |
aaacttacttttacttgatgtatccaaaatataaaccacttttaca |
35524444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 35527072 - 35527011
Alignment:
| Q |
460 |
gttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtggattcaataaca |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
35527072 |
gttgaccttctactgcatgtgatatgacttttctagcaatgctaccagtgggttcaataaca |
35527011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 35520902 - 35520858
Alignment:
| Q |
231 |
aacttacttttacttgatgtatccaaaatataaaccacttttaca |
275 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35520902 |
aacttacttttacttgatgtatccataatataaaccacttttaca |
35520858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 35521049 - 35521003
Alignment:
| Q |
46 |
atgcatattttagttcactcttggatgagtccaaattgaatataaat |
92 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
35521049 |
atgcatatttgatttcactcttggatgagtctaaattgaatataaat |
35521003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University