View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11838_high_5 (Length: 380)
Name: NF11838_high_5
Description: NF11838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11838_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 107 - 380
Target Start/End: Original strand, 38815928 - 38816201
Alignment:
| Q |
107 |
acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgcc |
206 |
Q |
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| T |
38815928 |
acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacccaaatgcc |
38816027 |
T |
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| Q |
207 |
gcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt |
306 |
Q |
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| T |
38816028 |
gcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt |
38816127 |
T |
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| Q |
307 |
tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaa |
380 |
Q |
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| T |
38816128 |
tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaa |
38816201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 38815671 - 38815781
Alignment:
| Q |
1 |
gatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactgtccaaacttacaagc |
100 |
Q |
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| T |
38815671 |
gatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactgtccaaacttacaagc |
38815770 |
T |
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| Q |
101 |
actactactta |
111 |
Q |
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| T |
38815771 |
actactactta |
38815781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
| Q |
261 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
310 |
Q |
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| T |
38821542 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
38821591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 5424847 - 5424925
Alignment:
| Q |
133 |
gggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaatt |
212 |
Q |
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| T |
5424847 |
gggactaaacccaccctctcaaaggcaacacaatgaaggtgttggaggctgcaatgaaggaaaacc-aaaggccgcaatt |
5424925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
| Q |
8 |
gatagactccgatatcatcttagagtttgggttgagtctaattcaac |
54 |
Q |
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| T |
33455905 |
gatagactctgataccatcttagaatttgggttgagtctaactcaac |
33455859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
| Q |
18 |
gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa |
63 |
Q |
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| T |
7252297 |
gataccatcttagaatttgggttgagcctaactcaaccctacaaaa |
7252252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
| Q |
24 |
atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt |
70 |
Q |
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|||||| | |||||||||||||||||| |||||||||||| |||||| |
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| T |
2115576 |
atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt |
2115530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
| Q |
23 |
catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg |
80 |
Q |
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| T |
21048692 |
catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg |
21048749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
| Q |
18 |
gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa |
63 |
Q |
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| T |
1348868 |
gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa |
1348913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 22867069 - 22866994
Alignment:
| Q |
161 |
cacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaat |
237 |
Q |
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| T |
22867069 |
cacaacgaaggtgttggaagctgcaatgaaggcaaac-taaaggccgcaattaaggcgactaggggcagaccacaat |
22866994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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