View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11838_high_6 (Length: 380)
Name: NF11838_high_6
Description: NF11838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11838_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 11119468 - 11119116
Alignment:
| Q |
1 |
catgcatttcaactaaagtaacccacattcatttagattgaactaaccatatcgtgggtagatt-attctgaggccacactagcaagatccaattcagaa |
99 |
Q |
| |
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| T |
11119468 |
catgcatttcaactaaagtaacccacattcatttagattgaactaaccatatccccc-tccattgattctgaggtcacactagcaagatccaattcagaa |
11119370 |
T |
|
| Q |
100 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119369 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
11119270 |
T |
|
| Q |
200 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
299 |
Q |
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| T |
11119269 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
11119170 |
T |
|
| Q |
300 |
tttaccttgaagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
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| T |
11119169 |
tttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 11111696 - 11111345
Alignment:
| Q |
5 |
catttcaactaaagtaacccacattcatttagattgaactaaccatatcg---tgggtagattattctgaggccacactagcaagatccaattcagaaga |
101 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||| | | ||||||||| | ||||||||||||||||||| |
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| T |
11111696 |
catttcatctaaagtaacccacattcatttagattgaactaaccatatccccttccattgattctgcagaggccacaatgccaagatccaattcagaaga |
11111597 |
T |
|
| Q |
102 |
tttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctgg |
201 |
Q |
| |
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||||||||||| ||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11111596 |
tttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattgaatttataaagttctga |
11111497 |
T |
|
| Q |
202 |
aagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
301 |
Q |
| |
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||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11111496 |
aagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttt |
11111397 |
T |
|
| Q |
302 |
taccttgaagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||| ||||| |
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|
| T |
11111396 |
taccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 82 - 353
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
| Q |
82 |
gcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca |
181 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
10793178 |
gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca |
10793277 |
T |
|
| Q |
182 |
ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc |
281 |
Q |
| |
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||| || ||||| ||| |||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10793278 |
ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc |
10793377 |
T |
|
| Q |
282 |
actttgaagcaaaccctttttaccttgaagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||| ||| |||||||||| ||||| |
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|
| T |
10793378 |
actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 353
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
108 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
207 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
208 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
307 |
Q |
| |
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| ||||| | | | | || ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| |||||||| ||| |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
308 |
gaagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
|||||||| ||| | ||||||||| |||||||||||||| ||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 353
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
109 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
208 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
|
| Q |
209 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
308 |
Q |
| |
|
|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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|
| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
309 |
aagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
224 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| | |
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|
| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
324 |
gttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
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|
| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 109 - 353
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
109 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
208 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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|
| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
209 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
308 |
Q |
| |
|
| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
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|
| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
309 |
aagattgttgtagtggttcttgtctaatttatcaggagttgttgg |
353 |
Q |
| |
|
|||||| ||| | ||||||||| |||||||||||||| ||||| |
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|
| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
243 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
301 |
Q |
| |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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|
| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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