View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11838_high_9 (Length: 359)
Name: NF11838_high_9
Description: NF11838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11838_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 39040952 - 39040814
Alignment:
| Q |
19 |
tgtgttagttcaaccagttattggactgtcccttgtacgactctgtctttcttgactttttaaccaaatgtctttgtagttaaatctgaaatagaatgca |
118 |
Q |
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| T |
39040952 |
tgtgttagttcaaccagttattggactgtcccttgtacgactctgtctttcttgactttttaaccaaatgtctttgtagttaaatctgaaatagaatgca |
39040853 |
T |
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| Q |
119 |
aaattgttacaatcccttcacacatattggtgtgtttgg |
157 |
Q |
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| T |
39040852 |
aaattgttacaatcccttcacacatattggtgtgtttgg |
39040814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 31694196 - 31694346
Alignment:
| Q |
182 |
ccaccataggaaagttatatttaacgactagatcaaatgaagtacacactcttattatactctgtcaaacatagtaatatttttacactatctttcatca |
281 |
Q |
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| T |
31694196 |
ccaccataggaaagttaaatttaacgattagatcaaatgaagtacacactcttattatactccgtcaaacataggattatttttacactatctttcatca |
31694295 |
T |
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| Q |
282 |
tcctgtccttcatgccccattccaccaccacct--aagttcctcactatca |
330 |
Q |
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| T |
31694296 |
ttctgtcctccatgccccactccaccaccacctccaagttcctcactatca |
31694346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 45534062 - 45534212
Alignment:
| Q |
182 |
ccaccataggaaagttatatttaacgactagatcaaatgaagtacacactcttattatactctgtcaaacatagtaatatttttacactatctttcatca |
281 |
Q |
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| T |
45534062 |
ccaccataagaaagttatatttaacgactagatcaaataaagtacacactcttattatactccgacaaacatagtattatttttacactatctttcatca |
45534161 |
T |
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| Q |
282 |
tcctgtccttcatgccccattccaccaccac--ctaagttcctcactatca |
330 |
Q |
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| T |
45534162 |
tcctgtccttcatgccccattccaacaccacttccaagttcctcactatca |
45534212 |
T |
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