View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11838_low_1 (Length: 250)

Name: NF11838_low_1
Description: NF11838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11838_low_1
NF11838_low_1
[»] chr7 (2 HSPs)
chr7 (17-170)||(11738911-11739064)
chr7 (186-239)||(11739088-11739141)
[»] chr3 (2 HSPs)
chr3 (209-239)||(22486703-22486733)
chr3 (210-239)||(53681889-53681918)
[»] chr4 (3 HSPs)
chr4 (206-235)||(12712026-12712055)
chr4 (206-235)||(24063216-24063245)
chr4 (209-237)||(24675080-24675108)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 11738911 - 11739064
Alignment:
Q  17 attgatgtaaaatattgattcatgactacaataaacttgaacttcaacgtttgcaaagagtaaaaacgtacaaataaatctaaactgaatttatgagatt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||    
T  11738911 attgatgtaaaatatttattcatgactacaataaacttgaacttcaacgtttgaaaagagtaaaaacgtacaaataaatctaaactgagtttatgaaatt 11739010  T
Q  117 aaattgacaagaaaataagtatttgaaaagtaaataacttagaaagtaaaatac 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11739011 aaattgacaagaaaataagtatttgaaaagtaaataacttagaaagtaaaatac 11739064  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 11739088 - 11739141
Alignment:
Q  186 ttggtggtgtcgagggcccgactccaaatcttgcatatattatgcattgttctt 239  Q
    ||||||||||| ||||  |||||||| |||||||||||||||||||||||||||    
T  11739088 ttggtggtgtctagggttcgactccagatcttgcatatattatgcattgttctt 11739141  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 22486733 - 22486703
Alignment:
Q  209 ccaaatcttgcatatattatgcattgttctt 239  Q
    |||||||||||||||||||||||||||||||    
T  22486733 ccaaatcttgcatatattatgcattgttctt 22486703  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 53681889 - 53681918
Alignment:
Q  210 caaatcttgcatatattatgcattgttctt 239  Q
    ||||||||||||||||||||||||||||||    
T  53681889 caaatcttgcatatattatgcattgttctt 53681918  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 12712026 - 12712055
Alignment:
Q  206 actccaaatcttgcatatattatgcattgt 235  Q
    ||||||||||||||||||||||||||||||    
T  12712026 actccaaatcttgcatatattatgcattgt 12712055  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 24063216 - 24063245
Alignment:
Q  206 actccaaatcttgcatatattatgcattgt 235  Q
    ||||||||||||||||||||||||||||||    
T  24063216 actccaaatcttgcatatattatgcattgt 24063245  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 24675080 - 24675108
Alignment:
Q  209 ccaaatcttgcatatattatgcattgttc 237  Q
    |||||||||||||||||||||||||||||    
T  24675080 ccaaatcttgcatatattatgcattgttc 24675108  T

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