View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11839_high_5 (Length: 304)
Name: NF11839_high_5
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11839_high_5 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 11996741 - 11996447
Alignment:
| Q |
3 |
cgtaactcaccgtcacattggtctctgactcaacaaaaccccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagc |
102 |
Q |
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| T |
11996741 |
cgtaactcaccgtcacattggtctctgactcaataaaaccccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagc |
11996642 |
T |
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| Q |
103 |
tcatggactgctgatgtattcccagggaccaaaatgaaagaaaaccnnnnnnnttcttcattttccaaacatgttattttctttctcttcgttgacataa |
202 |
Q |
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| T |
11996641 |
tcatggactgctgatgtattcccagggaccaaaatgaaagaaaaccaaaaaaattcttcattttccaaacatgttattttctttctcttcgttgacataa |
11996542 |
T |
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| Q |
203 |
catcctttcagattatttcaaacaatttttagtatgtgatcctccaatgcatgtttcaaccatccaacaccaaatcaacttagaaacctatgcta |
297 |
Q |
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| T |
11996541 |
catcctttcagattatatcaaacaatttttagcatgtgatcctccaatgcatgtttcaaccatccaacaccaaatcaacttagaaacctaagcta |
11996447 |
T |
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Target: scaffold0019 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 106743 - 106854
Alignment:
| Q |
35 |
acaaaaccccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagctcatggactgctgatgtattcccagggaccaa |
134 |
Q |
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|||||||||| ||||||||||||||||||||||| | ||||||| | ||||||| ||| |||| || |||||||||||||||||||||||| |||||| |
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| T |
106743 |
acaaaacccctattagatccttcaatttgttagtcaatttagtctctgatgtggaaaatgaaagaggcacatggactgctgatgtattcccagcgaccaa |
106842 |
T |
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| Q |
135 |
aatgaaagaaaa |
146 |
Q |
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| T |
106843 |
aatgaaaaaaaa |
106854 |
T |
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