View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11839_high_9 (Length: 204)
Name: NF11839_high_9
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11839_high_9 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 11996856 - 11997025
Alignment:
| Q |
16 |
atgaaggaaaattcagcttaagtcttaacacatctttcacctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaa |
115 |
Q |
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| T |
11996856 |
atgaatgaaaattcagcttaagtcttaacacatctttcacctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaa |
11996955 |
T |
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| Q |
116 |
cgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaagttgagtgaacaa |
185 |
Q |
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| T |
11996956 |
cgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaagttgagtgaacaa |
11997025 |
T |
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Target: scaffold0019 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 106282 - 106165
Alignment:
| Q |
68 |
aaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
167 |
Q |
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| T |
106282 |
aaaaaaaaaggaatcaagcacagtaattaccttccatcaggcaaataacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
106183 |
T |
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| Q |
168 |
acgaagttgagtgaacaa |
185 |
Q |
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| T |
106182 |
gtgaagttgagtgaacaa |
106165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 36634849 - 36634771
Alignment:
| Q |
89 |
agtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
167 |
Q |
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| T |
36634849 |
agtatttaccttccatcaggcaagtagcgacggatggtaaaaggaattttccgctctcgtagctccttcatggcaatct |
36634771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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