View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11839_low_1 (Length: 843)
Name: NF11839_low_1
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11839_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 775; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 12 - 826
Target Start/End: Original strand, 4750794 - 4751608
Alignment:
| Q |
12 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
111 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4750794 |
caaagcgaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750893 |
T |
|
| Q |
112 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750894 |
tttttataaacatctcaaagcggcctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
4750993 |
T |
|
| Q |
212 |
atttctcagttttcaaagatttcagagaatatgtccgtttctgatttacggtaaccataaaaaatgtttaacgatttcaaagaatgtatgttggcaatga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
4750994 |
atttctcagttttcaaagatttcagagaatatgtccgtttctgatttacggtaaccataaacaatatttaacgatttcaaagaatgtatgttggcaatga |
4751093 |
T |
|
| Q |
312 |
tttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataatagggtacttatcgtgaccataaaagttaccaaatacaataa |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4751094 |
tttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataattgggtacttatcgtgaccataaaagttaccaaatacaataa |
4751193 |
T |
|
| Q |
412 |
tgaacctaaatatatagacgtcacagacacaaattggtttaggcgtcacacaattctagaacacaaaattgaacaccattatttgaaaacatagtttgta |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751194 |
tgaacctaaatatatagacgtcacagacacaaattggtttaggcgtcacacaattctagaacacaaaattgaacaccattatttgaaaacatagtttgta |
4751293 |
T |
|
| Q |
512 |
tgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccactgctaagttttctatatctccattttctctcttgaagc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751294 |
tgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccactgctaagttttctatatctccattttctctcttgaagc |
4751393 |
T |
|
| Q |
612 |
aaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtcttaattgtgctatggattct |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751394 |
aaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtcttaattgtgctatggattct |
4751493 |
T |
|
| Q |
712 |
aggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggtttgttctaacataatgtcttaaatttttatcatttccaagtaccacaa |
811 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4751494 |
aggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggtttgttctaacgtaatgtcttaaatttttatcatttccaagtaccacaa |
4751593 |
T |
|
| Q |
812 |
agcaccgcatttgat |
826 |
Q |
| |
|
||||||||||||||| |
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|
| T |
4751594 |
agcaccgcatttgat |
4751608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 4750588 - 4750795
Alignment:
| Q |
12 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4750588 |
caaagggaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750687 |
T |
|
| Q |
112 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750688 |
tttttataaacatctcaaagcggcctcccttccgcccccaactttggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
4750787 |
T |
|
| Q |
212 |
atttctca |
219 |
Q |
| |
|
|||||||| |
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|
| T |
4750788 |
atttctca |
4750795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 51322911 - 51322713
Alignment:
| Q |
36 |
acacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51322911 |
acacgcaacttgtttggcagttttatcaaatgtggcattaagatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
51322812 |
T |
|
| Q |
136 |
ctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctc----attatgttcatttctcagttttcaaaga |
230 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51322811 |
ctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattaattatgttcatttctcagttttcaaaga |
51322713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 51322721 - 51322608
Alignment:
| Q |
286 |
tttcaaagaatgtatgttggcaatgatttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataatagggtacttatcgtg |
385 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
51322721 |
tttcaaagaatgtatgtaggcaatgatttgacaaagccctgtcttcccattttctagatcttagtcttta--ttgaatcaataattgggtacttatcgtg |
51322624 |
T |
|
| Q |
386 |
accataaaagttacca |
401 |
Q |
| |
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| |||||||||||||| |
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|
| T |
51322623 |
atcataaaagttacca |
51322608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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