View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11839_low_3 (Length: 468)

Name: NF11839_low_3
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11839_low_3
NF11839_low_3
[»] chr4 (4 HSPs)
chr4 (22-455)||(7231022-7231440)
chr4 (212-271)||(7322665-7322724)
chr4 (397-455)||(44640169-44640227)
chr4 (395-455)||(22804638-22804697)
[»] chr2 (6 HSPs)
chr2 (357-455)||(17648860-17648957)
chr2 (358-455)||(14662318-14662416)
chr2 (369-452)||(132688-132772)
chr2 (358-431)||(45338562-45338636)
chr2 (409-452)||(1453989-1454032)
chr2 (395-431)||(45336288-45336324)
[»] chr3 (6 HSPs)
chr3 (395-455)||(48027350-48027410)
chr3 (395-455)||(48024059-48024119)
chr3 (395-453)||(48024612-48024670)
chr3 (397-455)||(48025170-48025228)
chr3 (397-453)||(5907771-5907827)
chr3 (358-455)||(28784504-28784599)
[»] chr7 (2 HSPs)
chr7 (358-451)||(13108886-13108980)
chr7 (395-455)||(13111175-13111235)
[»] chr6 (1 HSPs)
chr6 (358-445)||(6723451-6723539)
[»] chr1 (4 HSPs)
chr1 (71-169)||(25615363-25615461)
chr1 (377-431)||(9535265-9535320)
chr1 (217-289)||(25615463-25615533)
chr1 (395-431)||(1550185-1550221)
[»] chr5 (2 HSPs)
chr5 (358-431)||(32797997-32798071)
chr5 (358-431)||(32800309-32800383)
[»] chr8 (2 HSPs)
chr8 (358-431)||(44731832-44731906)
chr8 (358-455)||(44734143-44734238)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 7231440 - 7231022
Alignment:
Q  22 cattggggagagtattgcttgttcaataaggtaatcaagtcctcaattgtt-caatgacatgaaaccaagataagtaacaaataaa-ttattgatccaag 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||    
T  7231440 cattggggagagtattgcttgttcaacaaggtaatcaagtcctcaattgtttcaatgat-tgaaaccaagataagtaacaaataaaattattgatccaag 7231342  T
Q  120 cttaagaaagtgaattcttatagcaacgttgataaaattattgattcaaacaacactataaatgaccatttaaaattcactgttataccttgacataaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  7231341 cttaagaaagtgaattcttatagcaacgttgataaaattattgattcaaacgacactataaatgaccatttaaaattcactgttatacctcgacataaac 7231242  T
Q  220 taaaccaattctaggcagtaacctgtaaaacactttcctccctagattctaccaagttttctttaagaactgttggagattgatatttttctgtcaaaat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7231241 taaaccaattctaggcagtaacctgtaaaacactttcctccctagattctaccaagttttctttaagaactgttggagattgatatttttctgtcagaat 7231142  T
Q  320 aattactatcataattagattgtcataattagattgttttttctttcataattagattgttgcttgttttaagttagtgtcataattagattgttgctta 419  Q
    ||||||||||||||||||||||               ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  7231141 aattactatcataattagattg---------------tttttctgtcataattagattgttgcttg-tttaagttagtgtcataattagattgctgctta 7231058  T
Q  420 tttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||||||||||| ||||| |||||||||||||||    
T  7231057 tttagtaagtaaagtagtccgtaggtaatgatgtct 7231022  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 7322665 - 7322724
Alignment:
Q  212 acataaactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctac 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7322665 acataaactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctac 7322724  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 44640169 - 44640227
Alignment:
Q  397 tgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    ||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||||||||||    
T  44640169 tgtcataattagatttttgtttatttaataagtaaagtagtcactaggtaatgatgtct 44640227  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 455
Target Start/End: Original strand, 22804638 - 22804697
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||| ||||||||||||| ||||||||| |||||||||  ||| |||||||||||||||||    
T  22804638 agtgccataattagattgctgcttatttggtaagtaaaagagt-cctaggtaatgatgtct 22804697  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 17648860 - 17648957
Alignment:
Q  357 tttttctttcataattagattgttgcttgttttaagttagtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    ||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||  ||||| |||||||||||||||    
T  17648860 tttttctgtcataattagcttgttgcttgttt-aagttaatgtcataattagattgttgcttattaagtatgtaaaatagtccttaggtaatgatgtct 17648957  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 14662318 - 14662416
Alignment:
Q  358 ttttctttcataattagattgttgcttgttt-taagttagtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||| ||||||||| | |||||||||||| |   | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  14662318 ttttctgtcataattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaacagtccctaggtaatgatgtct 14662416  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 132688 - 132772
Alignment:
Q  369 aattagattgttgcttgtttt-aagttagtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatg 452  Q
    ||||||||||||||||||||| |||| |||||||||||||| | | |||||||||| ||||||||| |||| ||| |||||||||    
T  132688 aattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtaatgatg 132772  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 45338562 - 45338636
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    |||||| |||||||||   |||||||||||| |||||  ||||||||| |||||||||||||||||| ||||||||    
T  45338562 ttttctgtcataattaatgtgttgcttgttt-aagtttaagtgtcatagttagattgttgcttatttggtaagtaa 45338636  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 1453989 - 1454032
Alignment:
Q  409 attgttgcttatttagtaagtaaagcagtccctaggtaatgatg 452  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||    
T  1453989 attgttgcttgtttagtaagtaaagaagtccctagataatgatg 1454032  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 45336288 - 45336324
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  45336288 agtgtcatatttagattgttgcttatttggtaagtaa 45336324  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 48027410 - 48027350
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48027410 agtgtcataattagattgttgcttatttagtaagtaaaacagtccctaggtaatgatgtct 48027350  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 48024119 - 48024059
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48024119 agtgtcataattagattgttgcttatttagtaagtaaaacagtcccaaggtaatgatgtct 48024059  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 48024670 - 48024612
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  48024670 agtgtcataattagattgttgcttatttagtaagtaaaacagtcccaaggtaatgatgt 48024612  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 48025228 - 48025170
Alignment:
Q  397 tgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||||||||||||||||||||||||||||||||| || |||| || |||||||||||    
T  48025228 tgtcataattagattgttgcttatttagtaagtaaaacaatcccaagttaatgatgtct 48025170  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 5907771 - 5907827
Alignment:
Q  397 tgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgt 453  Q
    |||||||||||||||||||||||||||| |||| ||  |||| ||||||||| ||||    
T  5907771 tgtcataattagattgttgcttatttagcaagtgaaaaagtctctaggtaataatgt 5907827  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 28784504 - 28784599
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||| |||||||||   |||||||||||| |||||  ||||| ||| |||||||||||||||||| ||||||||   ||| |||||||||||||||||    
T  28784504 ttttctctcataattaatgtgttgcttgttt-aagtttaagtgttatagttagattgttgcttatttggtaagtaa--gagt-cctaggtaatgatgtct 28784599  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 13108980 - 13108886
Alignment:
Q  358 ttttctttcataattagattgttgcttgttt-taagttagtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgat 451  Q
    |||||| ||||||||| | |||||||||||| |   | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13108980 ttttctgtcataattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagtaaaacagtccctaggtaatgat 13108886  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 13111235 - 13111175
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  13111235 agtgccataattagattgttgcttatttagtaagtaaaatagtccctaggtaataatgtct 13111175  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 6723451 - 6723539
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaa-gttagtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggt 445  Q
    |||||| ||||||||| | |||||||||||| |  || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6723451 ttttctgtcataattaaagtgttgcttgtttaagtgtaagtgtcataattagattgttgcttatttagtaagtaaaacagtccctaggt 6723539  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 25615363 - 25615461
Alignment:
Q  71 ttcaatgacatgaaaccaagataagtaacaaataaattattgatccaagcttaagaaagtgaattcttat-agcaacgttgataaaattattgattcaaa 169  Q
    ||||||||| ||||||||| ||||||||| |  || |||||||||||||||||||||||| |||||| || ||||| | |||||||||| ||||| ||||    
T  25615363 ttcaatgac-tgaaaccaatataagtaacgatgaagttattgatccaagcttaagaaagtaaattctcatgagcaatgctgataaaattgttgatccaaa 25615461  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 9535265 - 9535320
Alignment:
Q  377 tgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||    
T  9535265 tgttgcttgttt-aagtttaagtgtcataattagattgttgcttatttggtaagtaa 9535320  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 25615463 - 25615533
Alignment:
Q  217 aactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctaccaagttttctttaagaac 289  Q
    |||||||| |||| |||||||||||||   ||||||||| |||||||||||||||  ||||  ||||||||||    
T  25615463 aactaaacaaattttaggcagtaacctc--aaacacttttctccctagattctactgagttcactttaagaac 25615533  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 1550185 - 1550221
Alignment:
Q  395 agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  1550185 agtgtcatagttagattgttgcttatttggtaagtaa 1550221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 32797997 - 32798071
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    |||||| |||||||||   |||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||    
T  32797997 ttttctgtcataattaatgtgttgcttgttt-aagtttaagtgtcataattagattgttgcttatttggtaagtaa 32798071  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 32800309 - 32800383
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    |||||| |||||||||   |||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||    
T  32800309 ttttctgtcataattaatgtgttgcttgttt-aagtttaagtgtcataattagattgttgcttatttggtaagtaa 32800383  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 44731832 - 44731906
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaa 431  Q
    |||||| |||||||||   |||||||||||| |||||  ||||||||| |||||||||||||||||| ||||||||    
T  44731832 ttttctgtcataattaatgtgttgcttgttt-aagtttaagtgtcatagttagattgttgcttatttggtaagtaa 44731906  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 44734143 - 44734238
Alignment:
Q  358 ttttctttcataattagattgttgcttgttttaagtt--agtgtcataattagattgttgcttatttagtaagtaaagcagtccctaggtaatgatgtct 455  Q
    |||||| |||||||||   |||||||||||| |||||  ||||||||| |||| ||||||||||||| ||||||||   ||| |||||||||||||||||    
T  44734143 ttttctgtcataattaatgtgttgcttgttt-aagtttaagtgtcatagttaggttgttgcttatttggtaagtaa--gagt-cctaggtaatgatgtct 44734238  T

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