View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11839_low_4 (Length: 418)

Name: NF11839_low_4
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11839_low_4
NF11839_low_4
[»] chr1 (4 HSPs)
chr1 (11-402)||(34593790-34594181)
chr1 (14-101)||(34578391-34578478)
chr1 (206-285)||(34578117-34578196)
chr1 (335-402)||(34577956-34578023)
[»] chr6 (9 HSPs)
chr6 (11-103)||(32601041-32601133)
chr6 (11-103)||(32590570-32590662)
chr6 (200-285)||(32590357-32590442)
chr6 (205-285)||(32600805-32600885)
chr6 (335-402)||(32590196-32590263)
chr6 (335-402)||(32600644-32600711)
chr6 (339-402)||(24883687-24883750)
chr6 (47-106)||(24883380-24883439)
chr6 (233-276)||(24883552-24883595)
[»] chr7 (2 HSPs)
chr7 (339-377)||(27526724-27526762)
chr7 (339-377)||(27532378-27532416)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 34594181 - 34593790
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594181 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca 34594082  T
Q  111 atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594081 atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat 34593982  T
Q  211 gacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593981 gacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcac 34593882  T
Q  311 tcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34593881 tcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcacatttc 34593790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
Q  14 aggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt 101  Q
    |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||    
T  34578478 aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt 34578391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 34578196 - 34578117
Alignment:
Q  206 agcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    ||||||||||||||   |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34578196 agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 34578117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 34578023 - 34577956
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttc 402  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||    
T  34578023 tattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttc 34577956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 32601133 - 32601041
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa 103  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  32601133 cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaa 32601041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 32590662 - 32590570
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa 103  Q
    |||||||||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  32590662 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaa 32590570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 32590442 - 32590357
Alignment:
Q  200 ctccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    |||||||| ||||||||||||  ||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32590442 ctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 32590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 32600885 - 32600805
Alignment:
Q  205 tagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    ||||||||||||||||  ||||  |||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32600885 tagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 32600805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 32590263 - 32590196
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttc 402  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||    
T  32590263 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttc 32590196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 32600711 - 32600644
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttc 402  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||    
T  32600711 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttc 32600644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 24883687 - 24883750
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttc 402  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttc 24883750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 24883380 - 24883439
Alignment:
Q  47 agtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaagga 106  Q
    |||||||||||||||||||||||||||   ||||| |||||||| ||| |||||| ||||    
T  24883380 agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggtgagga 24883439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24883552 - 24883595
Alignment:
Q  233 aataaatgggcatcgtatgctggacctggaggatggaatggtaa 276  Q
    ||||||||||| || || ||||||||||||||||||||||||||    
T  24883552 aataaatgggcttcttacgctggacctggaggatggaatggtaa 24883595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 27526724 - 27526762
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgac 377  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgac 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 27532378 - 27532416
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgac 377  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgac 27532416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University