View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11839_low_5 (Length: 357)

Name: NF11839_low_5
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11839_low_5
NF11839_low_5
[»] chr1 (20 HSPs)
chr1 (80-346)||(1153571-1153837)
chr1 (86-278)||(3265378-3265572)
chr1 (82-269)||(1240445-1240637)
chr1 (126-276)||(22667113-22667261)
chr1 (80-210)||(45385216-45385349)
chr1 (122-223)||(35405395-35405496)
chr1 (122-199)||(4626523-4626601)
chr1 (106-223)||(29062335-29062453)
chr1 (122-268)||(49762375-49762520)
chr1 (17-62)||(1153829-1153874)
chr1 (113-265)||(38742443-38742595)
chr1 (170-253)||(20756781-20756865)
chr1 (122-210)||(23897882-23897971)
chr1 (17-62)||(1240406-1240451)
chr1 (123-200)||(15103039-15103116)
chr1 (123-192)||(33735750-33735819)
chr1 (122-151)||(42783946-42783975)
chr1 (17-62)||(45385341-45385386)
chr1 (30-62)||(22667684-22667716)
chr1 (25-61)||(35405310-35405346)
[»] chr3 (14 HSPs)
chr3 (86-276)||(33682578-33682769)
chr3 (112-270)||(168609-168766)
chr3 (122-223)||(11365106-11365207)
chr3 (82-269)||(33510019-33510208)
chr3 (86-223)||(8266563-8266702)
chr3 (112-276)||(39838515-39838678)
chr3 (97-269)||(27538710-27538881)
chr3 (123-192)||(46744007-46744076)
chr3 (123-200)||(15670978-15671055)
chr3 (122-197)||(11383652-11383727)
chr3 (32-62)||(11383585-11383615)
chr3 (25-61)||(27541174-27541210)
chr3 (122-210)||(47000848-47000935)
chr3 (122-182)||(54417032-54417092)
[»] chr5 (16 HSPs)
chr5 (122-269)||(3193445-3193592)
chr5 (87-192)||(502827-502931)
chr5 (82-242)||(16569252-16569411)
chr5 (135-275)||(39542481-39542620)
chr5 (122-200)||(12263638-12263716)
chr5 (82-223)||(32257654-32257796)
chr5 (122-267)||(7886539-7886682)
chr5 (170-267)||(27548459-27548555)
chr5 (122-210)||(16570478-16570566)
chr5 (121-276)||(20870688-20870841)
chr5 (170-222)||(18600488-18600540)
chr5 (123-193)||(36161101-36161170)
chr5 (123-200)||(18626718-18626795)
chr5 (123-204)||(25034341-25034422)
chr5 (30-62)||(7887292-7887324)
chr5 (18-54)||(12263761-12263797)
[»] chr4 (23 HSPs)
chr4 (122-269)||(2113898-2114045)
chr4 (86-266)||(43515782-43515964)
chr4 (82-269)||(12320422-12320610)
chr4 (82-269)||(23870065-23870251)
chr4 (124-206)||(40807832-40807914)
chr4 (148-264)||(51002606-51002722)
chr4 (123-268)||(25779566-25779711)
chr4 (80-207)||(4596444-4596572)
chr4 (140-223)||(48653745-48653828)
chr4 (83-194)||(29118490-29118603)
chr4 (123-223)||(5627551-5627651)
chr4 (82-265)||(7853313-7853496)
chr4 (123-238)||(1750052-1750167)
chr4 (86-192)||(36071557-36071664)
chr4 (123-261)||(35372041-35372179)
chr4 (127-265)||(37226298-37226436)
chr4 (178-223)||(7745948-7745993)
chr4 (25-62)||(23870034-23870071)
chr4 (25-58)||(25790450-25790483)
chr4 (25-54)||(47059677-47059706)
chr4 (25-54)||(47082096-47082125)
chr4 (14-62)||(8733169-8733217)
chr4 (123-223)||(55147639-55147739)
[»] chr6 (21 HSPs)
chr6 (122-276)||(33344880-33345033)
chr6 (82-263)||(12174338-12174520)
chr6 (122-223)||(34329792-34329893)
chr6 (122-276)||(35121865-35122017)
chr6 (86-260)||(31787837-31788009)
chr6 (86-223)||(10668850-10668985)
chr6 (127-199)||(31153630-31153702)
chr6 (170-265)||(35067109-35067204)
chr6 (161-265)||(4337556-4337660)
chr6 (82-245)||(9815620-9815783)
chr6 (18-62)||(12174300-12174344)
chr6 (80-210)||(34573170-34573301)
chr6 (176-206)||(31236946-31236976)
chr6 (196-272)||(3359785-3359861)
chr6 (114-204)||(6549692-6549784)
chr6 (18-54)||(10668991-10669027)
chr6 (18-62)||(13229287-13229331)
chr6 (170-210)||(18991756-18991796)
chr6 (30-62)||(33344788-33344820)
chr6 (170-210)||(34969874-34969914)
chr6 (30-62)||(35122056-35122088)
[»] chr8 (24 HSPs)
chr8 (105-238)||(31277929-31278064)
chr8 (86-265)||(13580286-13580465)
chr8 (122-223)||(13236241-13236342)
chr8 (124-245)||(41849442-41849562)
chr8 (123-211)||(36042847-36042934)
chr8 (122-200)||(9191253-9191331)
chr8 (122-223)||(43872566-43872667)
chr8 (122-193)||(26835593-26835664)
chr8 (80-169)||(34142040-34142130)
chr8 (122-206)||(32349535-32349620)
chr8 (122-206)||(32366196-32366281)
chr8 (129-217)||(35480977-35481066)
chr8 (123-191)||(22486596-22486664)
chr8 (86-181)||(22930343-22930439)
chr8 (170-266)||(24606878-24606974)
chr8 (80-269)||(4350588-4350784)
chr8 (127-197)||(32646574-32646644)
chr8 (33-62)||(4350776-4350805)
chr8 (17-54)||(13580471-13580508)
chr8 (120-193)||(21347503-21347576)
chr8 (196-269)||(32036868-32036941)
chr8 (14-62)||(9191176-9191224)
chr8 (18-54)||(26835707-26835743)
chr8 (30-62)||(34142016-34142048)
[»] chr7 (19 HSPs)
chr7 (122-223)||(33480460-33480560)
chr7 (122-210)||(26448431-26448519)
chr7 (122-223)||(3351139-3351240)
chr7 (89-222)||(35812639-35812774)
chr7 (123-193)||(21129326-21129396)
chr7 (123-223)||(15133276-15133376)
chr7 (123-223)||(26914312-26914412)
chr7 (123-269)||(21828221-21828366)
chr7 (82-223)||(3940621-3940762)
chr7 (122-268)||(49164701-49164846)
chr7 (123-200)||(13431656-13431733)
chr7 (18-62)||(30095865-30095909)
chr7 (128-266)||(40351695-40351831)
chr7 (86-200)||(42335937-42336052)
chr7 (24-62)||(15134556-15134594)
chr7 (122-200)||(48008572-48008649)
chr7 (25-62)||(21292835-21292872)
chr7 (80-200)||(22318656-22318776)
chr7 (82-166)||(26912345-26912430)
[»] scaffold0777 (1 HSPs)
scaffold0777 (122-223)||(5904-6005)
[»] chr2 (17 HSPs)
chr2 (123-239)||(2886978-2887094)
chr2 (82-268)||(36506802-36506983)
chr2 (122-223)||(36186579-36186680)
chr2 (122-223)||(44157274-44157374)
chr2 (123-223)||(16646928-16647028)
chr2 (123-199)||(30257773-30257849)
chr2 (123-223)||(38134131-38134230)
chr2 (82-204)||(5163810-5163933)
chr2 (85-206)||(40876911-40877033)
chr2 (122-223)||(40705890-40705989)
chr2 (178-266)||(15925950-15926038)
chr2 (129-223)||(14952039-14952134)
chr2 (122-200)||(4206331-4206409)
chr2 (171-268)||(15925589-15925685)
chr2 (123-204)||(16547724-16547805)
chr2 (18-59)||(16647942-16647983)
chr2 (14-62)||(4206667-4206714)
[»] scaffold0527 (2 HSPs)
scaffold0527 (129-223)||(1711-1805)
scaffold0527 (129-223)||(9774-9868)
[»] scaffold1173 (1 HSPs)
scaffold1173 (122-222)||(387-487)
[»] scaffold0531 (1 HSPs)
scaffold0531 (80-175)||(9717-9813)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 80 - 346
Target Start/End: Complemental strand, 1153837 - 1153571
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactcctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatctt 179  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  1153837 atttagtagttagtattaaatagttatatttgtttttaactcctttaattaattctattaaaaatatgttttaagagaactttgattttcaattaatctt 1153738  T
Q  180 ttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccctaaa 279  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  1153737 ttgcaacaaaaaacgcaagaagaaagatattcggataattaaaacggtacaactttattgattcgcacaggacaccaaaaatcttaggactgactgtaaa 1153638  T
Q  280 acaaataagtcaccctcaccatagtagtgttgtctttctttataggtttaccatgttgttcttgatg 346  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153637 acaaataagtcatcctcaccatagtagtgttgtctttctttataggtttaccatgttgttcttgatg 1153571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 3265572 - 3265378
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||| ||||||  | |||||||||||||||||||| || ||| | |||||||||||||||    
T  3265572 tagttagtattaaatagatatatttctttttaactccctttgat-aattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgca 3265474  T
Q  185 ataaaaaatgcaagaagaaagatattcggataattaaaa--cagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccctaa 278  Q
    | |||||||||| ||||||||| ||||| ||||||||||   | ||||||||||||||||||   | ||||| |||||||||| ||| ||| ||||    
T  3265473 acaaaaaatgcacgaagaaagacattcgaataattaaaatgtaatacaactttattgattcgtctaagacactaaaaatcttaagaccgactctaa 3265378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 1240445 - 1240637
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgtttta----agagaaccttgatttttaatgaat 176  Q
    ||||||||||||| || |||  ||||| | |||||||  | ||||||||||||||||| ||||||| ||||     ||||||| | |||| | |||||||    
T  1240445 ttagtagttagtactatataaatatatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatgaat 1240544  T
Q  177 cttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||||||| |||||||||||||||||| ||||  ||||||||||||  | |||| ||||||| ||||  || | |||||| |||||||||||    
T  1240545 cttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggac 1240637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 22667261 - 22667113
Alignment:
Q  126 gattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaaca 225  Q
    ||||||||||||| ||||| | ||||  || ||| |||||| | ||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||      
T  22667261 gattaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaagg 22667162  T
Q  226 gtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    ||| || ||||||| ||| | || | ||||||||||||||| |||| ||||    
T  22667161 gtataa-tttattgtttctc-catggcaccaaaaatcttagaactggccct 22667113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 45385349 - 45385216
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactcc-tttgattaatt----ctattaaaaatatgttttaagagaaccttgatttttaatga 174  Q
    ||||||||||| ||||||||| | ||||| | ||||||||||| ||| ||||||     ||||| | |||||||||  |||||||||||||||| |||||    
T  45385349 atttagtagtttgtattaaatggatatatttctttttaactccctttaattaataaatactattgataatatgttt--agagaaccttgattttcaatga 45385252  T
Q  175 atcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    ||||||||||| ||||||| ||||| |||| |||||    
T  45385251 atcttttgcaacaaaaaatacaagaggaaaaatatt 45385216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 35405395 - 35405496
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||| |||| |||| || |||| ||| ||| ||||||   ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||    
T  35405395 ctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaa 35405494  T
Q  222 aa 223  Q
    ||    
T  35405495 aa 35405496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 4626601 - 4626523
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatga-atcttttgcaataaaaaatgcaaga 199  Q
    ||||||||||||||||| ||||||| |||| | | |||||| ||| | ||||| ||||||||||||||||||| |||||    
T  4626601 ctttgattaattctattgaaaatatatttttaaaaaaccttaattatgaatgagatcttttgcaataaaaaatacaaga 4626523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 29062453 - 29062335
Alignment:
Q  106 tatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaa 204  Q
    ||||| ||||||| || ||| ||||||||| ||| ||||||| || | ||||||| || ||| | ||| |||||||||||| ||||||| ||||||||||    
T  29062453 tatatttttttaattcacttggattaattcaatttaaaatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaa 29062354  T
Q  205 gatattcggataattaaaa 223  Q
     ||||| |  |||||||||    
T  29062353 tatattggagtaattaaaa 29062335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 49762520 - 49762375
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||||| | ||||| | || || || |||||||  ||||||||| ||||| | ||||||||    
T  49762520 ctttgattaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaa-atattagaataattaa 49762422  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttagga 268  Q
    ||    |||| ||||||| ||||  || | || ||||||||||||||    
T  49762421 aaagacacaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 1153874 - 1153829
Alignment:
Q  17 acaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  1153874 acaccatcttttagggggcaccacaattattatttttatttagtag 1153829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 38742443 - 38742595
Alignment:
Q  113 ttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattc 211  Q
    ||||||||| |||||||||  |||||| ||||||| |||| ||||||| |||||| | ||| |||||||| ||| |||||||||| | | ||||| ||||    
T  38742443 ttttaactcactttgattatatctattgaaaatatatttttagagaactttgattatgaattaatcttttacaaaaaaaaatgcagggaaaaagacattc 38742542  T
Q  212 ggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatctta 265  Q
      || |||||||    ||||||| |||||||||| ||  |||| ||||||||||    
T  38742543 aaatcattaaaaggacacaactt-attgattcgcgcattacacaaaaaatctta 38742595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 20756781 - 20756865
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa-cagtacaactttattgattcgcacaggaca 253  Q
    |||||||||||||||||||| ||| ||| |||||||| ||||| |||| |||||  | ||||| ||||||||||||  |||||||    
T  20756781 aatgaatcttttgcaataaagaatacaataagaaagacattcgaataagtaaaaggaatacaaatttattgattcgtccaggaca 20756865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 23897971 - 23897882
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaa--tgcaagaagaaagatatt 210  Q
    ||||||||||||||||| |||| || |||| ||| ||| |||||| | ||||||| |||||||| ||||||  |||||||||||| |||||    
T  23897971 ctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaatatt 23897882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 1240406 - 1240451
Alignment:
Q  17 acaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    ||||||| |||| |||||||| |||||||||||||||| |||||||    
T  1240406 acaccatttttttaggggcactaaaattattatttttacttagtag 1240451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 15103116 - 15103039
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    |||||||||||||||| ||   || |||| ||||||| |||||| | |||||||||| ||||| ||||||| ||||||    
T  15103116 tttgattaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 15103039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 33735819 - 33735750
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaa 192  Q
    ||||||||||| |||| ||||||| |||| ||| ||| |||||| | |||||||||||||| | ||||||    
T  33735819 tttgattaattatattgaaaatatatttttagacaactttgattataaatgaatcttttgccaaaaaaaa 33735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 42783946 - 42783975
Alignment:
Q  122 ctttgattaattctattaaaaatatgtttt 151  Q
    ||||||||||||||||||||||||||||||    
T  42783946 ctttgattaattctattaaaaatatgtttt 42783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 45385386 - 45385341
Alignment:
Q  17 acaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    ||||||| || ||||||| | |||||||||||||||||||||||||    
T  45385386 acaccattttataaggggtatcaaaattattatttttatttagtag 45385341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 22667716 - 22667684
Alignment:
Q  30 aggggcaccaaaattattatttttatttagtag 62  Q
    |||||||| ||||||||||||||||||||||||    
T  22667716 aggggcacaaaaattattatttttatttagtag 22667684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 35405310 - 35405346
Alignment:
Q  25 ttttaaggggcaccaaaattattatttttatttagta 61  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  35405310 tttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 33682769 - 33682578
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    ||||||||| || |||| ||||| | ||||||| || ||||||||||||||||||||||||| |||| | |||||||||| | | || |||||||||| |    
T  33682769 tagttagtactagatagatatatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaaggaatcttttgta 33682670  T
Q  185 ataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    | || |||||| |||||||||| ||||| | ||||||||  | |||||||||||||||||  ||  ||||| ||||||||| || |||||||    
T  33682669 acaacaaatgctagaagaaagacattcgaaaaattaaaagggcacaactttattgattcgtccaacacacccaaaatcttaagattgaccct 33682578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 168766 - 168609
Alignment:
Q  112 tttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    |||||||||| || |||||||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||| || ||||||||||| |||||||| |||    
T  168766 tttttaactcgctgtgattaattctattgaaaatatatttta-gagaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaagaaatt 168668  T
Q  211 cggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggact 270  Q
     | |||||||||  | | ||||||||||||||||  |||| ||  |||||||||||||||    
T  168667 agaataattaaagga-tgcaactttattgattcgtccagggcataaaaaatcttaggact 168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 11365106 - 11365207
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||| ||| |||| || |||| | | ||| |||||| | ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||    
T  11365106 ctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaa 11365205  T
Q  222 aa 223  Q
    ||    
T  11365206 aa 11365207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 33510208 - 33510019
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactccttt-gattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    ||||||||||||  || |||| ||||| | ||||||| || ||| ||||||||| ||| ||||||| |||| ||||||| || ||| | |||||||||||    
T  33510208 ttagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaactttaattataaatgaatcttt 33510109  T
Q  181 tgcaataaaaaatgcaagaagaa-agatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||| ||||||| ||| || ||   | |||   ||||||||||  | |||| ||||||| ||||| | |||||||||||||||||||||    
T  33510108 tgcaacaaaaaattcaaaaaaaattaaaattaaaataattaaaatggcacaattttattgtttcgccctggacaccaaaaatcttaggac 33510019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 8266702 - 8266563
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactcc-tttgattaat-tctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgc 183  Q
    |||||||||||| |||| ||||| |  |||||||||  |||||||||  |||| | |||||||||||| |||||||||||||| |||||||| ||||| |    
T  8266702 tagttagtattatataggtatattttcttttaactctgtttgattaaactctactgaaaatatgttttcagagaaccttgattattaatgaaccttttac 8266603  T
Q  184 aataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    || ||||||| ||| |||| ||| |||   ||||||||||    
T  8266602 aacaaaaaatacaaaaagagagacatttaaataattaaaa 8266563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 39838515 - 39838678
Alignment:
Q  112 tttttaactcctt-tgattaattctattaaaaatatgttttaagagaacctt-gatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatat 209  Q
    |||||||||| || ||||||||| |||| ||||||| |||||| |||||||| |||| | |||||||||||||||| |||| || ||| || || |||||    
T  39838515 tttttaactcattatgattaattatattgaaaatat-ttttaa-agaacctttgattatgaatgaatcttttgcaacaaaagatacaataataatgatat 39838612  T
Q  210 tcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    |||  ||||||||| || ||||||||||| ||||   ||||||  ||||||||||| || |||||||    
T  39838613 tcgactaattaaaa-agcacaactttattaattcattcaggacgtcaaaaatcttaagattgaccct 39838678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 27538881 - 27538710
Alignment:
Q  97 aaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgc 195  Q
    |||||| ||||| | ||||||| || ||||||||||||||||| ||||||| |||| | | ||| ||||||   ||||||| |||||||| ||||||| |    
T  27538881 aaatagatatatttatttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaacaaaaaatac 27538782  T
Q  196 aagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||| ||| |||||   ||| ||||||  |||||| ||||||| |||   || ||||||||||||||||||||    
T  27538781 aagaa-aaaaatattgaaatagttaaaatggtacaa-tttattgtttcatccaagacaccaaaaatcttaggac 27538710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 46744007 - 46744076
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaa 192  Q
    |||||||||||||||||||||||| ||||   |||||||| ||| | |||||||||||||||| ||||||    
T  46744007 tttgattaattctattaaaaatatatttttgtagaaccttaattatgaatgaatcttttgcaaaaaaaaa 46744076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 15670978 - 15671055
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    |||||||||||||||| ||||||| |||| ||| ||| |||||| | |||||||||| ||||| |||| || ||||||    
T  15670978 tttgattaattctattgaaaatatctttttagaaaactttgattataaatgaatcttgtgcaacaaaatatacaagaa 15671055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 11383652 - 11383727
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaa 197  Q
    ||||||||||||| ||| |||| || |||| ||| ||| |||||| | ||||||| |||||||| |||||||||||    
T  11383652 ctttgattaattcaattgaaaaaatatttttagataactttgattataaatgaatattttgcaacaaaaaatgcaa 11383727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 11383585 - 11383615
Alignment:
Q  32 gggcaccaaaattattatttttatttagtag 62  Q
    |||||||||||||||||||||||||||||||    
T  11383585 gggcaccaaaattattatttttatttagtag 11383615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 27541210 - 27541174
Alignment:
Q  25 ttttaaggggcaccaaaattattatttttatttagta 61  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  27541210 tttttaggggcatcaaaattattatttttatttagta 27541174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 47000935 - 47000848
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    ||||||||||||||||| |||| || |||| ||| ||  |||||| | ||||||| |||||||| |||||||  ||||||||| |||||    
T  47000935 ctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatt 47000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 54417092 - 54417032
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttg 182  Q
    ||||||||||||||| | |||||||||||| | ||||  |||||| | |||||||||||||    
T  54417092 ctttgattaattctactgaaaatatgtttttaaagaattttgattataaatgaatcttttg 54417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 3193592 - 3193445
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||| ||||| |||| |||||||||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  3193592 ctttgaataattatattgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaa 3193493  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||    | || |||||| |||||| |||| | | ||||||||||||||    
T  3193492 aaggacataattttattaattcgcccagggcgctaaaaatcttaggac 3193445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 502827 - 502931
Alignment:
Q  87 agttagtattaaatagttatatatgtttttaactcctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaat 186  Q
    ||||||||||| |||| ||||| | |||||||||| |||||||||||||||| ||||||| |||| ||||||| |||||| | ||||||||||||||||     
T  502827 agttagtattatatagatatatttctttttaactc-tttgattaattctattgaaaatatatttttagagaactttgattatgaatgaatcttttgcaaa 502925  T
Q  187 aaaaaa 192  Q
    ||||||    
T  502926 aaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 16569411 - 16569252
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactcc--tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatctt 179  Q
    ||||||| || ||||| |||| ||||| | |||||||||||  |||| ||||||||||| |||||||||||| ||| |||||||| | | ||| |||||     
T  16569411 ttagtaggtaatattatataggtatatttctttttaactcccatttg-ttaattctattgaaaatatgtttttagaaaaccttgaatataaataaatcta 16569313  T
Q  180 ttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgatt 242  Q
    ||||||  ||||||||||||||||||| |||   |||||| |||| |||||||||||||||||    
T  16569312 ttgcaa--aaaaatgcaagaagaaagacattgcaataatttaaacggtacaactttattgatt 16569252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 39542481 - 39542620
Alignment:
Q  135 tattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactt 234  Q
    |||| |||||||||||| | ||||| |||||| | ||| || ||||| |||||||||||||||||||||||| ||||  ||||||||||  | |||| ||    
T  39542481 tattgaaaatatgtttttaaagaactttgattatgaataaa-cttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacaattt 39542579  T
Q  235 tattgattcgcacaggacaccaaaaatcttaggactgaccc 275  Q
    |||| ||||||| ||| |||||||||| ||| ||| |||||    
T  39542580 tattaattcgcatagggcaccaaaaatattaagaccgaccc 39542620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 12263716 - 12263638
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    ||||||||||||||||| ||||||| |||| | ||||| |||||| |  |||||||||||||||||||| |||||||||    
T  12263716 ctttgattaattctattgaaaatatatttttaaagaactttgattatagatgaatcttttgcaataaaagatgcaagaa 12263638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 32257796 - 32257654
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||||||||||| |||| ||||| | ||||||| |  |||||||||||| |||| |||||||  ||| ||||||| |||||| | ||||||| ||     
T  32257796 ttagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatacttttagagaactttgattataaatgaattttg 32257697  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    || || |||||||||||||| ||| | ||| | ||||||||||    
T  32257696 tgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaa 32257654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 7886682 - 7886539
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||||||| | || ||| ||| |||||| | | ||||| ||||| || |||||| | ||||||||| || || | ||||||||    
T  7886682 ctttgattaattctattgaaaatatatgtttagataactttgattataagtgaatattttggaacaaaaaa-gtaagaagaaaaatgtttgaataattaa 7886584  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttagg 267  Q
    ||  | |||| ||||||| ||||| | |||||||||||||||||||    
T  7886583 aatggcacaa-tttattgtttcgcccgggacaccaaaaatcttagg 7886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 27548555 - 27548459
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttagg 267  Q
    ||||||| ||| ||| ||||||||  ||||||||||| ||| | ||||||||||  | ||||||||||||||||| |||||||| ||||| |||||||    
T  27548555 aatgaatttttcgcactaaaaaatataagaagaaagacatttgaataattaaaag-gcacaactttattgattcgtacaggacatcaaaagtcttagg 27548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 16570566 - 16570478
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||   ||| |||||||||| | | ||||||||| || ||| |||||    
T  16570566 ctttgattaattctattaaaaatatatttttagagaactttgattaaaaattaatcttttgccacagaaaatgcaaaaacaaaaatatt 16570478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 276
Target Start/End: Original strand, 20870688 - 20870841
Alignment:
Q  121 cctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataatta 220  Q
    ||||||||||||| |||| | ||||| |||| ||| ||| |||||| | ||||||| || ||||| |||||||||||||| ||| |||||   |||||||    
T  20870688 cctttgattaattttattgataatatatttttagataactttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataatta 20870786  T
Q  221 aaacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    |||  |||||| ||||||| ||||  |||| ||| ||||||  |||||| ||||||    
T  20870787 aaatggtacaa-tttattgtttcgtccagggcactaaaaattctaggaccgaccct 20870841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 18600488 - 18600540
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||| |||||||||||||||||| ||||||||||||| |||  |||||||||    
T  18600488 aatgattcttttgcaataaaaaatacaagaagaaagatgttcaaataattaaa 18600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 36161101 - 36161170
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaat 193  Q
    ||||||||||| |||| |||||||||||||| | ||| |||||  | ||||||||||||| ||||||||||    
T  36161101 tttgattaattatattgaaaatatgttttaa-aaaactttgatcatgaatgaatcttttgtaataaaaaat 36161170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 18626718 - 18626795
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    |||||||||||||||| || | || ||||  |||||| |||||| | |||||||||| ||||| ||||||| ||||||    
T  18626718 tttgattaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 18626795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 25034422 - 25034341
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaa 204  Q
    ||||||||||| |||||||||| | |||| ||| ||| || ||  | ||||||| |||||||| |||||||| |||||||||    
T  25034422 tttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaacaaaaaatgtaagaagaaa 25034341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 7887324 - 7887292
Alignment:
Q  30 aggggcaccaaaattattatttttatttagtag 62  Q
    ||||||||||||||||||||||||| |||||||    
T  7887324 aggggcaccaaaattattatttttacttagtag 7887292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 12263797 - 12263761
Alignment:
Q  18 caccatattttaaggggcaccaaaattattattttta 54  Q
    |||||| |||| |||||||||||||||||||||||||    
T  12263797 caccatttttttaggggcaccaaaattattattttta 12263761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 2113898 - 2114045
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||| |||| |||||||||||| | |||||||||||| | ||| |||||||||||||||||||| |||||||||||| ||||  ||||||||    
T  2113898 ctttgattaattatattgaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaa 2113997  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||    | |  |||||||||||||  ||| ||| ||||||||||||||    
T  2113998 aaggacatagttttattgattcgcttagggcactaaaaatcttaggac 2114045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 266
Target Start/End: Complemental strand, 43515964 - 43515782
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    |||||||||||| |||| ||||||| ||||||| |   ||||||||||| |||||| ||||| || | ||| ||| |||||| | |||||||||||||||    
T  43515964 tagttagtattatatagatatatatctttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattataaatgaatcttttgca 43515865  T
Q  185 ataaaaaa-tgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttag 266  Q
    | |||||| || |||||||||  |||| | |||| |||||  | |||| ||||||| ||||| ||||||||||||||||||||    
T  43515864 acaaaaaaatgtaagaagaaaactattagaataactaaaagggcacaattttattgtttcgcccaggacaccaaaaatcttag 43515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 12320422 - 12320610
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||||||||| | |||| ||||||| ||||||| ||  ||||||||||| |||| | ||||| |||| | | ||| | |||| | ||||||| |||    
T  12320422 ttagtagttagtataatatagatatatatctttttaattcggtttgattaattatattgagaatatttttttaaaaaacttcgattataaatgaatattt 12320521  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||| |||||||| |||||||||  |||| | |||||||||| || |||| ||||||| || |  |||||||||||||||||| ||||    
T  12320522 tgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttttgttcaggacaccaaaaatcttcggac 12320610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 23870065 - 23870251
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactccttt-gattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    ||||||||||||| || |||| ||||||| ||||||| || ||| ||||||||||||| ||||||| |||| ||| ||| |||||| | ||||||| |||    
T  23870065 ttagtagttagtactatatagatatatatttttttaattcgttttgattaattctattgaaaatatatttttagataactttgattataaatgaatattt 23870164  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||| |||||| ||||||| ||| | |||   ||||||||||  || ||| ||||||| ||||  || | ||||||||||||||||||    
T  23870165 tgcaacaaaaaaagcaagaa-aaaaaaattgtaataattaaaaaggttcaa-tttattgtttcggccaaggcaccaaaaatcttaggac 23870251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 40807914 - 40807832
Alignment:
Q  124 ttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaaga 206  Q
    |||||||||||||||||||||||||||| ||| ||| |||||| | |||||||||| | ||| ||||||||||| ||||||||    
T  40807914 ttgattaattctattaaaaatatgtttttagataacattgattatgaatgaatcttatccaacaaaaaatgcaaaaagaaaga 40807832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 51002722 - 51002606
Alignment:
Q  148 ttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcac 247  Q
    |||| ||||||||||  |||| |||||||||||||| |||||||||| ||||||||||| ||| | ||||||||||  | |||| |||||| |||||| |    
T  51002722 ttttcagagaaccttatttttgaatgaatcttttgcgataaaaaatgtaagaagaaagacatttgaataattaaaaaggaacaagtttatttattcgccc 51002623  T
Q  248 aggacaccaaaaatctt 264  Q
     || |||||||| ||||    
T  51002622 cgggcaccaaaagtctt 51002606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 25779711 - 25779566
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| | |||||||||| |||  ||| ||| |||||| | |||||||||| ||||| ||| ||||||| ||| |||||||||  ||||||| |    
T  25779711 tttgattaattttgttaaaaatatatttgtagaaaactttgattatgaatgaatcttctgcaacaaagaatgcaaaaaggaagatattcaaataattaga 25779612  T
Q  223 acagtacaactttattgattcgcacaggacaccaaaaatcttagga 268  Q
    |     ||||||||||||||||  ||||||  ||||||||||||||    
T  25779611 atgacgcaactttattgattcgtccaggacttcaaaaatcttagga 25779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 4596572 - 4596444
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatct 178  Q
    ||||||| ||||||| || |||  ||||| ||||||||| || |||||||| ||| |||| ||||||| |  ||  | |||||||||| | |||||||||    
T  4596572 atttagttgttagtaatatatatatatatttgtttttaattcactttgattgattttattgaaaatatatactagaaaaaccttgattatgaatgaatct 4596473  T
Q  179 tttgcaataaaaaatgcaagaagaaagat 207  Q
    ||||||| ||||||||||| |||||||||    
T  4596472 tttgcaacaaaaaatgcaaaaagaaagat 4596444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 48653745 - 48653828
Alignment:
Q  140 aaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    ||||||| || | |||||| ||| ||| | |||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||    
T  48653745 aaaatattttcttagagaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaa 48653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 29118490 - 29118603
Alignment:
Q  83 tagtagttagtattaaatagttatatatgtttttaact--cctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||||||| || |||| ||||| | ||||||| |  | ||| ||||||| |||| |||||||||||| | ||||| |||||| | ||||||| |||    
T  29118490 tagtagttagtactacatagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatattt 29118589  T
Q  181 tgcaataaaaaatg 194  Q
    ||||||||||||||    
T  29118590 tgcaataaaaaatg 29118603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 5627551 - 5627651
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| |||| |||| ||||||| | | |||  ||||| | ||||||| |||||||| ||||||||||| |||||| ||||| | |||||||||    
T  5627551 tttgattaattatattgaaaaaatgtttttatataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaa 5627650  T
Q  223 a 223  Q
    |    
T  5627651 a 5627651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 265
Target Start/End: Original strand, 7853313 - 7853496
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    ||||||||||||| || |||| |||||||  |||||| ||  ||||||||||  |||| ||||||| |||| ||| ||| |||||| | |||||||  ||    
T  7853313 ttagtagttagtactatatagatatatatccttttaattcagtttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaattctt 7853412  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatctta 265  Q
    |||||| ||||||| |||||||||  ||||   ||||||||||  |||||| ||||||| ||||  ||  ||||| |||||||||    
T  7853413 tgcaat-aaaaatgtaagaagaaaactattgaaataattaaaagggtacaattttattgtttcgtccaaaacacctaaaatctta 7853496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 1750052 - 1750167
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||| ||||||||||||||   |||| | ||||||||||||   ||| |||||||| |||  ||||||| |||||||||||||||   |||||||||    
T  1750052 tttgatttattctattaaaaatgcatttttaaagaaccttgattacaaataaatcttttacaacgaaaaatgaaagaagaaagatattttaataattaaa 1750151  T
Q  223 acagtacaactttatt 238  Q
    ||   |||||||||||    
T  1750152 acgtcacaactttatt 1750167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 36071664 - 36071557
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    ||||||||| || |||| ||||| | ||||||| |  ||||||||||||| ||| ||||||| |||| ||||||| |||||| | |||||||||| ||||    
T  36071664 tagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaaatatatttttagagaactttgattataaatgaatcttatgca 36071565  T
Q  185 ataaaaaa 192  Q
    | ||||||    
T  36071564 acaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 35372179 - 35372041
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| |||| ||||||| |||| ||||| | || ||| | || ||||||  ||||| |||||||| ||||||||| ||||| | ||| |||||    
T  35372179 tttgattaattatattgaaaatatatttttagagagctttaattataaacgaatctcatgcaacaaaaaatgtaagaagaaaaatattagaatatttaaa 35372080  T
Q  223 acagtacaactttattgattcgcacaggacaccaaaaat 261  Q
    |  | |||||||||||| || |  |||| ||||||||||    
T  35372079 atggcacaactttattgttttgtccagggcaccaaaaat 35372041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 37226298 - 37226436
Alignment:
Q  127 attaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacag 226  Q
    ||||||||||||| |||||| |||| | |  |  |||||| || ||||||||||||||| |||||||| || || ||||| ||||  |||||||||| |     
T  37226298 attaattctattagaaatatattttcaaatgattttgattattgatgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaa 37226397  T
Q  227 tacaactttattgattcgcacaggacaccaaaaatctta 265  Q
     || | ||||||||||||  || ||||||||| ||||||    
T  37226398 cacgattttattgattcgtccaagacaccaaagatctta 37226436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 7745993 - 7745948
Alignment:
Q  178 ttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    |||| ||| |||||||||||||||||||||||| | ||||||||||    
T  7745993 ttttccaacaaaaaatgcaagaagaaagatatttgaataattaaaa 7745948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 23870034 - 23870071
Alignment:
Q  25 ttttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  23870034 tttttaggggcaccaaaattattatttttacttagtag 23870071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 25790450 - 25790483
Alignment:
Q  25 ttttaaggggcaccaaaattattatttttattta 58  Q
    |||| |||||||||||||||||||||||||||||    
T  25790450 tttttaggggcaccaaaattattatttttattta 25790483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 47059677 - 47059706
Alignment:
Q  25 ttttaaggggcaccaaaattattattttta 54  Q
    ||||||||||||||||||||||||||||||    
T  47059677 ttttaaggggcaccaaaattattattttta 47059706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 47082125 - 47082096
Alignment:
Q  25 ttttaaggggcaccaaaattattattttta 54  Q
    ||||||||||||||||||||||||||||||    
T  47082125 ttttaaggggcaccaaaattattattttta 47082096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 8733217 - 8733169
Alignment:
Q  14 agaacaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||||||| |||| | ||||||||||||||||| ||||| |||||||    
T  8733217 agaacaccatttttttaagggcaccaaaattattaattttacttagtag 8733169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 55147739 - 55147639
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| |||| ||||| | |||| ||||||| |||||| | |||||||||| | ||| |||||||  || | |||| ||||| | |||||||||    
T  55147739 tttgattaattttattgaaaatgtctttttagagaactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaa 55147640  T
Q  223 a 223  Q
    |    
T  55147639 a 55147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 33344880 - 33345033
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||||||| |||| ||| ||| |||||| | ||||||| |||||||| ||||||||| |||||||| ||||| | ||||||||    
T  33344880 ctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaa 33344979  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    ||  | | || ||||||| ||||  |||| |||||||||||||||| ||||||||    
T  33344980 aagggcataa-tttattgtttcgtccagggcaccaaaaatcttagggctgaccct 33345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 12174338 - 12174520
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactccttt-gattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    ||||||||||||| || |||| ||||| | ||||||| || ||| |||||||| |||||||||||| |||| ||||||| || ||| | |||||||||||    
T  12174338 ttagtagttagtactatatagatatatttctttttaattcgttttgattaattatattaaaaatatatttttagagaactttaattgtaaatgaatcttt 12174437  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatct 263  Q
    || || ||||| ||||||||| || |||||   |||| |||||||  |||| ||||||| ||||  || ||||||||||||||    
T  12174438 tgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaattttattgtttcgtccatgacaccaaaaatct 12174520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 34329893 - 34329792
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||||||| |||| ||||||| ||| || | |||  ||||||||||| |||||||||||||||||| ||||| | ||||||||    
T  34329893 ctttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaa 34329794  T
Q  222 aa 223  Q
    ||    
T  34329793 aa 34329792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 276
Target Start/End: Complemental strand, 35122017 - 35121865
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||||||| |||| ||| ||| |||||| | ||||||| ||||||||  |||||||| |||||||| ||||| | ||||||||    
T  35122017 ctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaa-caaaaatgctagaagaaaaatatttgaataattaa 35121919  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttaggactgaccct 276  Q
    ||  | | || ||||||| ||||  |||| |||||||||||||||| ||| ||||    
T  35121918 aagggcataa-tttattgtttcgtccagggcaccaaaaatcttagggctggccct 35121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 31787837 - 31788009
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    ||||||||||||| ||| ||||| | ||||||| || ||||||||||||||||| ||||||| |||  ||| ||| || ||| | ||||||| |||||||    
T  31787837 tagttagtattaagtagatatatttatttttaattcgctttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgca 31787936  T
Q  185 ataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaa 260  Q
    |  ||||||||||||  ||| |||||   ||||||||||  |||||| ||||||| ||||  ||||||||||||||    
T  31787937 actaaaaatgcaaga--aaaaatattgaaataattaaaaaggtacaa-tttattgtttcgtccaggacaccaaaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 10668985 - 10668850
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactcctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaa 185  Q
    |||||||||||| |||| ||||||| |||| || || ||||||||||| |||| ||||||| |||| ||| ||| |||||| | ||||||||| |||  |    
T  10668985 tagttagtattatatagatatatatcttttgaattcatttgattaattatattgaaaatat-tttttaga-aacgttgattataaatgaatctattgaga 10668888  T
Q  186 taaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
     ||||||| ||| |||||| ||||| | ||||||||||    
T  10668887 caaaaaatccaaaaagaaaaatattagaataattaaaa 10668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 31153702 - 31153630
Alignment:
Q  127 attaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaaga 199  Q
    ||||||| |||| |||||||||||| | | ||| |||||  | ||||||||||||||||||||||||||||||    
T  31153702 attaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgcaataaaaaatgcaaga 31153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 35067109 - 35067204
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatctta 265  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||  |||||||||| |  | || |||||||||||||  | ||| ||||||||||||    
T  35067109 aatgaatcttatgcaagaaaaaatgtaagaaaaaagatattcaaataattaaaataacataattttattgattcgccaaagacgccaaaaatctta 35067204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 4337660 - 4337556
Alignment:
Q  161 ttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaa 260  Q
    |||||| | ||| |||||||| ||| |||||||| |||||||||| |||| | ||||||||||  | |||| ||||||  || |  ||||||||||||||    
T  4337660 ttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaattttattattttgttcaggacaccaaaaa 4337561  T
Q  261 tctta 265  Q
    |||||    
T  4337560 tctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 9815783 - 9815620
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||||| || || |||| ||||| | ||||||| || |||||||||| | |||| ||||||| |||| ||| |||  ||||| | ||||| | |||    
T  9815783 ttagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaactatgattataaatgagt-ttt 9815685  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgc 245  Q
    || || |||||||||||||||||  ||||| | ||||||||||  | |||| ||||||| |||||    
T  9815684 tgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttattgtttcgc 9815620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 12174300 - 12174344
Alignment:
Q  18 caccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||    
T  12174300 caccattttttaagaggcaccaaaattattatttttacttagtag 12174344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 34573301 - 34573170
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgt--ttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaat 176  Q
    |||||||||||| ||||| |||| ||||||| |  |||||| ||  ||||||||||| |||| ||||||| |||| | ||||| |||||| | |||||||    
T  34573301 atttagtagttaatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatatttttaaagaactttgattataaatgaat 34573202  T
Q  177 cttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    |||||  || ||| ||||||| |||||| |||||    
T  34573201 ctttt--aaaaaagaatgcaaaaagaaaaatatt 34573170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 31236976 - 31236946
Alignment:
Q  176 tcttttgcaataaaaaatgcaagaagaaaga 206  Q
    |||||||||||||||||||||||||||||||    
T  31236976 tcttttgcaataaaaaatgcaagaagaaaga 31236946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 3359785 - 3359861
Alignment:
Q  196 aagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggactga 272  Q
    |||||||||| || | | |||||||||| |  |||||||||||||||||   |||||||||||| ||||| ||||||    
T  3359785 aagaagaaagttaattgaataattaaaagaacacaactttattgattcgtctaggacaccaaaagtcttacgactga 3359861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 6549784 - 6549692
Alignment:
Q  114 tttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatc-ttttgcaataaaaaatgcaagaagaaa 204  Q
    ||||||||| |||| ||||||||||| ||||||||||||   | |||||| |||||| | ||||| |||||||| |||| || ||||||||||    
T  6549784 tttaactccatttgcttaattctattgaaaatatgtttttgcataaccttaatttttgaggaatctttttgcaacaaaagatacaagaagaaa 6549692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 10669027 - 10668991
Alignment:
Q  18 caccatattttaaggggcaccaaaattattattttta 54  Q
    |||||| |||| |||||||||||||||||||||||||    
T  10669027 caccatttttttaggggcaccaaaattattattttta 10668991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13229287 - 13229331
Alignment:
Q  18 caccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||| |||| || |||||||||||||||||||||| |||||||    
T  13229287 caccatttttttagaggcaccaaaattattatttttacttagtag 13229331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 18991796 - 18991756
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  18991796 aatgaatcttgtgcaacaaaaaatgcaagaagaaaaatatt 18991756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 33344788 - 33344820
Alignment:
Q  30 aggggcaccaaaattattatttttatttagtag 62  Q
    ||||||||||||||||||||||||| |||||||    
T  33344788 aggggcaccaaaattattatttttacttagtag 33344820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 34969874 - 34969914
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    |||||||||||| ||| |||||||||||||||||| |||||    
T  34969874 aatgaatcttttacaacaaaaaatgcaagaagaaaaatatt 34969914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 35122088 - 35122056
Alignment:
Q  30 aggggcaccaaaattattatttttatttagtag 62  Q
    ||||||||||||||||||||||||| |||||||    
T  35122088 aggggcaccaaaattattatttttacttagtag 35122056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 31277929 - 31278064
Alignment:
Q  105 atatatgtttttaactc-ctttgattaattctattaaaaatatgt-tttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaaga 202  Q
    |||||| |||||||||| ||||||||||||||||| ||||||| | ||| |||||||||||||| | |||||||||||||||   |||||| ||||||||    
T  31277929 atatatttttttaactcactttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaaga 31278028  T
Q  203 aagatattcggataattaaaacagtacaactttatt 238  Q
    |||| ||||| ||||| ||||  | |||||||||||    
T  31278029 aagagattcgaataataaaaatggcacaactttatt 31278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 13580465 - 13580286
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    |||||||||||| |||  ||||| | ||||||| || ||||||||||||||||| ||||||| |||| | | ||| ||| || | ||||||| |||||||    
T  13580465 tagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaaatatatttttaaataactttggttataaatgaatattttgca 13580366  T
Q  185 ataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatctta 265  Q
    | |||||||||||||  ||| ||||| | |||||||||| |  | || ||||||| ||||  |||||||||||||||||||    
T  13580365 acaaaaaatgcaagacaaaaaatattagaataattaaaagaacataa-tttattgtttcgtccaggacaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 13236241 - 13236342
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||| | ||||||| |||| ||||||| |||||| | || |||| |||||||| ||| |||||||||||||| ||||| | ||||||||    
T  13236241 ctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaagaaaaatattggaataattaa 13236340  T
Q  222 aa 223  Q
    ||    
T  13236341 aa 13236342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 41849442 - 41849562
Alignment:
Q  124 ttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    ||||||||||||||| ||||||| |||| | |||| ||||||| |||||||||||||| ||| ||||||  ||| |||||||| ||||  ||||||||||    
T  41849442 ttgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaa-acaaaaagaaagacattcaaataattaaaa 41849540  T
Q  224 cagtacaactttattgattcgc 245  Q
     |  ||||||||| ||||||||    
T  41849541 taacacaactttactgattcgc 41849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 36042934 - 36042847
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattc 211  Q
    ||||||||||| |||| ||||||| |||||| |||||||||||| | ||| ||| |||||||| ||||||| |||||||||||| ||||    
T  36042934 tttgattaattttatttaaaatatattttaa-agaaccttgattatgaattaattttttgcaacaaaaaatacaagaagaaagaaattc 36042847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 9191253 - 9191331
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    ||||||||||||||||| ||||||| |||| |||||||  ||||| | |||||||||||| ||| ||| ||||||||||    
T  9191253 ctttgattaattctattcaaaatatatttttagagaactatgattataaatgaatcttttacaacaaataatgcaagaa 9191331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 43872566 - 43872667
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||| ||||||||||||  |||||| |||| | ||||| |||||| | |||||||||| ||||| ||||||| ||| |||||| ||||| | ||||||||    
T  43872566 ctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaa 43872665  T
Q  222 aa 223  Q
    ||    
T  43872666 aa 43872667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 26835664 - 26835593
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaat 193  Q
    |||| |||||||||||| ||||||| |||| ||||||| |||||| | |||||||||| ||||| |||||||    
T  26835664 cttttattaattctattgaaaatatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaat 26835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 34142040 - 34142130
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgattttt 169  Q
    ||||||||||||||| || |||| ||||| | |||||||  | ||||||||||||||||| ||||||| |||| ||| ||| |||||||||    
T  34142040 atttagtagttagtactatatagatatatttctttttaatccgctttgattaattctattgaaaatatattttcagataactttgattttt 34142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 32349535 - 32349620
Alignment:
Q  122 ctttgattaattctattaaaaatatgt-tttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaaga 206  Q
    ||||||||||||||||| ||||||| | ||| ||||||| |||||| |  |||||||||||||| | | |||| ||||||||||||    
T  32349535 ctttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgcacttacaaattcaagaagaaaga 32349620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 32366196 - 32366281
Alignment:
Q  122 ctttgattaattctattaaaaatatgt-tttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaaga 206  Q
    ||||||||||||||||| ||||||| | ||| ||||||| |||||| |  |||||||||||||| | | |||| ||||||||||||    
T  32366196 ctttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgcacttacaaattcaagaagaaaga 32366281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 35481066 - 35480977
Alignment:
Q  129 taattctattaaaaat-atgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataa 217  Q
    |||||||||| ||||| || |||| ||||||| |||||| | ||  |||||||||||| ||||||| |||||||||| ||||||| ||||    
T  35481066 taattctattgaaaatgatatttttagagaacattgattataaaaaaatcttttgcaacaaaaaatacaagaagaaaaatattcgaataa 35480977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 22486664 - 22486596
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaa 191  Q
    |||||||||||||||| |||||||  ||| ||||||| |||||| | |||||||||| ||||| |||||    
T  22486664 tttgattaattctattgaaaatatcattttagagaactttgattataaatgaatcttgtgcaaaaaaaa 22486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 22930343 - 22930439
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatctttt 181  Q
    ||||||||| || |||| ||||||| ||||||| || ||||||||||||||||| |||| || |||| ||| ||| |||||| | ||||||| ||||    
T  22930343 tagttagtactatatagatatatatctttttaattcgctttgattaattctattgaaaaaatatttttagataactttgattataaatgaatatttt 22930439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 24606878 - 24606974
Alignment:
Q  170 aatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttag 266  Q
    |||||||||||||||  |||||||| ||||||||||| |||   |||| |||||    |||||||| |||||||||  | |||||||||||||||||    
T  24606878 aatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaaggacacaactttgttgattcgcctaagacaccaaaaatcttag 24606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 4350784 - 4350588
Alignment:
Q  80 atttagtagttagtattaaatagttatata---tgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaat--- 172  Q
    |||||||||||||||||| |||| |||||    | ||||||| || ||||| ||||||||||| ||||||| |||| | | ||| |||||| |  ||       
T  4350784 atttagtagttagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttttatataactttgattatatataaa 4350685  T
Q  173 -gaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
     |||| |||| ||| |||||||||||||| ||| |||||   ||||||||||  |||||| ||||||| ||||  |||||||| ||||||| ||||||    
T  4350684 cgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaa-tttattgtttcgtccaggacacgaaaaatcctaggac 4350588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 32646644 - 32646574
Alignment:
Q  127 attaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaa 197  Q
    ||||||| |||||||||||| |||| | |||| ||| ||| | ||||||||| ||||||||||| ||||||    
T  32646644 attaattttattaaaaatatatttttaaagaatcttaattataaatgaatctcttgcaataaaacatgcaa 32646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 4350805 - 4350776
Alignment:
Q  33 ggcaccaaaattattatttttatttagtag 62  Q
    ||||||||||||||||||||||||||||||    
T  4350805 ggcaccaaaattattatttttatttagtag 4350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13580508 - 13580471
Alignment:
Q  17 acaccatattttaaggggcaccaaaattattattttta 54  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  13580508 acaccatttttttaggggcaccaaaattattattttta 13580471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 21347576 - 21347503
Alignment:
Q  120 tcctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaat 193  Q
    ||||||||||||||||||| ||||||| |||| | | ||  |||||| | |||||||||| |||||| ||||||    
T  21347576 tcctttgattaattctattgaaaatatatttttaaataaatttgattataaatgaatcttgtgcaatcaaaaat 21347503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 32036868 - 32036941
Alignment:
Q  196 aagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttaggac 269  Q
    ||||| ||||| ||||  ||||||||||   ||||||||||||||||||| | || || |||||||||||||||    
T  32036868 aagaaaaaagacattcaaataattaaaatgatacaactttattgattcgctccgggcatcaaaaatcttaggac 32036941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 9191176 - 9191224
Alignment:
Q  14 agaacaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||||||| |||| ||| ||| ||||||||||||||||| |||||||    
T  9191176 agaacaccatttttttaggagcatcaaaattattatttttacttagtag 9191224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 26835743 - 26835707
Alignment:
Q  18 caccatattttaaggggcaccaaaattattattttta 54  Q
    |||||| |||| |||||||||||||||||||||||||    
T  26835743 caccatttttttaggggcaccaaaattattattttta 26835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 34142016 - 34142048
Alignment:
Q  30 aggggcaccaaaattattatttttatttagtag 62  Q
    ||||||||||||| |||||||||||||||||||    
T  34142016 aggggcaccaaaactattatttttatttagtag 34142048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 33480560 - 33480460
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||| ||||||||||||||||| | |||||||| ||| | ||| |||||| ||||||||||||| |||||||||||| ||||  ||||||||    
T  33480560 ctttgattaattatattaaaaatatgtttttaaagaacctt-attatgaattaatcttctgcaataaaaaatacaagaagaaagacattcaaataattaa 33480462  T
Q  222 aa 223  Q
    ||    
T  33480461 aa 33480460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 26448431 - 26448519
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatatt 210  Q
    ||||||||||||||| ||||| ||| |||| ||||||| |||||  | |||||||||||||||| |||||||||||||| ||| |||||    
T  26448431 ctttgattaattctactaaaagtatatttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaagaaaaaaaatatt 26448519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 3351139 - 3351240
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||| ||| |||| ||| ||| |||||| | ||||||| |||| ||| |||||||||||||||||| |||||   ||||||||    
T  3351139 ctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatattttaataattaa 3351238  T
Q  222 aa 223  Q
    ||    
T  3351239 aa 3351240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 35812639 - 35812774
Alignment:
Q  89 ttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaa-aaatatgttttaagagaaccttgatttttaatgaatcttttgcaat 186  Q
    |||||| || |||| ||||| | ||||||| || ||||||| ||||||||| | |||||| |||| ||| ||| |||||| | ||||||| ||||||||     
T  35812639 ttagtactatatagatatatttctttttaattcgctttgatcaattctattgataaatatatttttagataactttgattataaatgaatattttgcaac 35812738  T
Q  187 aaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    |||||||||||||||||  ||||| | |||||||||    
T  35812739 aaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 21129396 - 21129326
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaat 193  Q
    |||||||||||||||| ||||||| |||| ||||||  |||||| | ||| ||||||||||||||||||||    
T  21129396 tttgattaattctattgaaaatatttttttagagaattttgattataaattaatcttttgcaataaaaaat 21129326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 15133376 - 15133276
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    |||||||||||||||| |||| || |||| ||| ||| |||||| | ||||||| |||| ||| |||||||| ||||| ||| ||||| | |||||||||    
T  15133376 tttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataattaaa 15133277  T
Q  223 a 223  Q
    |    
T  15133276 a 15133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 26914412 - 26914312
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| |||| ||||||| |||| | | ||| || ||| | ||||||| |||||||| |||||||||||||||||| |||||   |||||||||    
T  26914412 tttgattaattatattgaaaatatatttttaaataacgttaattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaa 26914313  T
Q  223 a 223  Q
    |    
T  26914312 a 26914312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 269
Target Start/End: Original strand, 21828221 - 21828366
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    |||||||||| ||||| ||||||  ||||| |||||| |||||| | |||||||||| ||||| |||||||  |||| |||| ||||| | |||||||||    
T  21828221 tttgattaatgctattgaaaatacttttta-gagaactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaa 21828319  T
Q  223 acagtacaactttattgattcgca-caggacaccaaaaatcttaggac 269  Q
    |  |||||| ||| ||  |||||  |||| ||||||||||||||||||    
T  21828320 agggtacaatttttttctttcgcctcagg-caccaaaaatcttaggac 21828366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 3940762 - 3940621
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||| ||||| | |||| ||||| | ||||||| |  ||||||||||||||||| ||||||| |||| | ||||| |||||| | ||| ||||||     
T  3940762 ttagtagtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactttgattataaataaatcttg 3940663  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    |||||  |||||| ||| |||||| ||||| | ||||||||||    
T  3940662 tgcaa-caaaaatacaaaaagaaaaatattagaataattaaaa 3940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 49164846 - 49164701
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||  ||||||||||| ||||| ||||| |||  || | |||||||||||||||  | |||||||||||||||||| |||   ||||||||    
T  49164846 ctttgattaatttaattaaaaatatttttta-gagaatcttatttatgaatgaatcttttgcagaataaaatgcaagaagaaagacatttacataattaa 49164748  T
Q  222 aacagtacaactttattgattcgcacaggacaccaaaaatcttagga 268  Q
    ||    |||| |||||||||| |  ||| ||| ||||| ||||||||    
T  49164747 aatgacacaattttattgattagtccagaacaacaaaagtcttagga 49164701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 13431733 - 13431656
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    ||||| |||||||||| ||||||| |||   ||||||||||||| | ||||||||||| |||| ||||||| ||||||    
T  13431733 tttgaataattctattgaaaatatatttgtggagaaccttgattatgaatgaatctttagcaacaaaaaatacaagaa 13431656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 30095909 - 30095865
Alignment:
Q  18 caccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||    
T  30095909 caccatttttttaggggcaccaaaattattatttttacttagtag 30095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 266
Target Start/End: Complemental strand, 40351831 - 40351695
Alignment:
Q  128 ttaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagt 227  Q
    ||||||||||| ||||||| |||| | ||||| |||||| | ||| |||||||  ||| |||||||||||||  ||| | ||| | ||||||||||  |     
T  40351831 ttaattctattgaaaatatatttttaaagaactttgattataaataaatctttatcaacaaaaaatgcaaga--aaaaaaattagaataattaaaaggga 40351734  T
Q  228 acaactttattgattcgcacaggacaccaaaaatcttag 266  Q
    | || ||||||| ||||  || |||||||||||||||||    
T  40351733 agaattttattgtttcgtccaagacaccaaaaatcttag 40351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 42336052 - 42335937
Alignment:
Q  86 tagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgca 184  Q
    |||||||||||| |||| ||||| | ||||||| ||  ||| ||||||| || | ||||||| |||| | | ||| |||||| | |||||||||||||||    
T  42336052 tagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatgaatcttttgca 42335953  T
Q  185 ataaaaaatgcaagaa 200  Q
    | |||||||| |||||    
T  42335952 acaaaaaatgtaagaa 42335937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 15134594 - 15134556
Alignment:
Q  24 attttaaggggcaccaaaattattatttttatttagtag 62  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  15134594 atttttaggggcaccaaaattattatttttacttagtag 15134556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 48008649 - 48008572
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    |||||||||||||||||||||| || |||| ||||||| |||||| | || ||||| ||| ||| ||||||| ||||||    
T  48008649 ctttgattaattctattaaaaaaatatttt-agagaactttgattataaaggaatcatttccaacaaaaaatacaagaa 48008572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 21292872 - 21292835
Alignment:
Q  25 ttttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  21292872 tttttaggggcaccaaaattattatttttacttagtag 21292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 22318776 - 22318656
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatct 178  Q
    |||||||||||| ||||| |||| ||| ||| |||| || ||| ||||||||||| |||| | ||||| |||| ||| ||| || ||| | ||| |||||    
T  22318776 atttagtagttaatattatatagatatgtatctttt-aattccgtttgattaattatattgagaatatatttttagaaaactttaattataaataaatct 22318678  T
Q  179 tttgcaataaaaaatgcaagaa 200  Q
    ||||||| |||||||| |||||    
T  22318677 tttgcaacaaaaaatgtaagaa 22318656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 26912345 - 26912430
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatt 166  Q
    ||||||||||||| || |||| ||||| | ||||||| || ||||||||||||||||| || |||| |||| ||| ||| ||||||    
T  26912345 ttagtagttagtactatatagatatatttctttttaattcgctttgattaattctattcaagatatatttttagataactttgatt 26912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 5904 - 6005
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||| |||| |||||||||||| | ||||  |||||| | ||||||| |||||||||||||||| || ||||||||| ||||  ||||||||    
T  5904 ctttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaa 6003  T
Q  222 aa 223  Q
    ||    
T  6004 aa 6005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 2887094 - 2886978
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||||||||||||| || |||| ||||||| |||||| | ||| |||| | | ||| ||||||||||||||||||  |||| | |||||||||    
T  2887094 tttgattaattctattaaaaaaatatttttagagaactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaagtattagaataattaaa 2886995  T
Q  223 acagtacaactttattg 239  Q
    |  |||||| |||||||    
T  2886994 aaggtacaattttattg 2886978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 268
Target Start/End: Complemental strand, 36506983 - 36506802
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    |||||||||||||||| ||||  |||| |||||||||||| |||||||| |||||||| |||||| ||||| ||| ||||     | | || ||||||||    
T  36506983 ttagtagttagtattatatagaaatatttgtttttaactctctttgattgattctattgaaaatacgtttttagaaaacc-----tatgaacgaatcttt 36506889  T
Q  181 tgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttagga 268  Q
    | |||   |||||||||||| ||||| ||| | || |||||||  ||||| |||||||||||||   ||| |||||||||||||||||    
T  36506888 tccaa-cgaaaatgcaagaaaaaagacatttgaatgattaaaaacgtacatctttattgattcgtctagggcaccaaaaatcttagga 36506802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 36186680 - 36186579
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||| |||| ||||||| |||| ||||||| |||||| | ||| |||||||||||| |||||||| | ||||||| | ||| | ||||||||    
T  36186680 ctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaagaaaaacattagaataattaa 36186581  T
Q  222 aa 223  Q
    ||    
T  36186580 aa 36186579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 44157274 - 44157374
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||||||||||||||||| |||||| |||| |||||| ||||||| | ||||||  |||||||  ||||| | |||||||||| ||||||  ||||||||    
T  44157274 ctttgattaattctattagaaatatatttttagagaaacttgattatgaatgaa-attttgcagcaaaaattacaagaagaaatatattcaaataattaa 44157372  T
Q  222 aa 223  Q
    ||    
T  44157373 aa 44157374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 16647028 - 16646928
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    |||||||||||||||| ||||||| |||| ||||||  || ||| | |||||||||| ||||| |||||||  ||||||||| |||||   |||||||||    
T  16647028 tttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatattaaaataattaaa 16646929  T
Q  223 a 223  Q
    |    
T  16646928 a 16646928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 30257849 - 30257773
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaaga 199  Q
    ||||||||||| |||| ||||||| |||| ||||||| |||||| | ||| ||||||||| || |||||||||||||    
T  30257849 tttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgcaaga 30257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 38134131 - 38134230
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaa 222  Q
    ||||||||||| |||||||||||| ||||| |||||||||  ||   |||||||||||||||| |||||||| ||||| ||||| ||| | |||| ||||    
T  38134131 tttgattaattatattaaaaatatttttta-gagaaccttatttacgaatgaatcttttgcaacaaaaaatgtaagaaaaaagacatttgaataactaaa 38134229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 5163810 - 5163933
Alignment:
Q  82 ttagtagttagtattaaatagttatatatgtttttaactcc-tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttt 180  Q
    ||||||||||||| || |||  ||||||| ||||||| ||  ||||||||||| |||| | |||||  ||| ||| ||| |||||| | |||||||||||    
T  5163810 ttagtagttagtactatataaatatatatctttttaattcggtttgattaattatattgagaatattattttagaaaactttgattataaatgaatcttt 5163909  T
Q  181 tgcaataaaaaatgcaagaagaaa 204  Q
    || || |||||||| |||||||||    
T  5163910 tgtaacaaaaaatgtaagaagaaa 5163933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 40877033 - 40876911
Alignment:
Q  85 gtagttagtattaaatagttatatatgtttttaactcctttg-attaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgc 183  Q
    ||||||||||||| |||  ||||| | |||||||||  |||| |||||||||||| ||||||| |||| | |||||||||||| | | ||||||||||      
T  40877033 gtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaatatatttttatagaaccttgattatgagtgaatcttttat 40876934  T
Q  184 aataaaaaatgcaagaagaaaga 206  Q
    ||| | ||||| ||||| |||||    
T  40876933 aatgagaaatggaagaaaaaaga 40876911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 40705989 - 40705890
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    ||||||||||||||||| ||| | | |||| | ||||||||||||   ||| ||| ||||| ||||||||||||||||||||||| ||||  ||||||||    
T  40705989 ctttgattaattctatttaaatt-tcttttga-agaaccttgattacaaataaattttttgtaataaaaaatgcaagaagaaagacattcaaataattaa 40705892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 15925950 - 15926038
Alignment:
Q  178 ttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttag 266  Q
    |||||||| |||||||| ||||||||| |||||   ||||||| ||  |||||| ||||||||||| | || ||||| |||||||||||    
T  15925950 ttttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttattgattcactcatgacacaaaaaatcttag 15926038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 14952039 - 14952134
Alignment:
Q  129 taattctattaaaaatatgttttaagagaacctt-gatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    |||| ||||| ||||||  |||| |||||||||| ||||   ||||||| |||||||| ||||| || || |||||||||||||| ||||||||||    
T  14952039 taatcctattgaaaatacatttttagagaacctttgattaggaatgaatattttgcaacaaaaattgtaaaaagaaagatattcgaataattaaaa 14952134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 4206409 - 4206331
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaa 200  Q
    ||||||||||||||||| |||| ||  ||| ||| ||| || ||| | ||||||| |||||||| ||||||||||||||    
T  4206409 ctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaacaaaaaatgcaagaa 4206331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 15925589 - 15925685
Alignment:
Q  171 atgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaacagtacaactttattgattcgcacaggacaccaaaaatcttagga 268  Q
    |||||||||||| || ||||||| ||| | ||||||  |||  |||||||||| || ||||||| |||||||||   |||||| ||||||||||||||    
T  15925589 atgaatcttttgtaacaaaaaatacaaaaggaaagacgttcaaataattaaaa-agcacaacttcattgattcgtttaggacatcaaaaatcttagga 15925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 16547724 - 16547805
Alignment:
Q  123 tttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaa 204  Q
    ||||||||||| |||| |||||||  ||| ||| ||| |||||| | |||| ||||||| ||| |||||||| |||||||||    
T  16547724 tttgattaattatattgaaaatattattttagaaaactttgattataaatggatcttttacaacaaaaaatgtaagaagaaa 16547805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16647983 - 16647942
Alignment:
Q  18 caccatattttaaggggcaccaaaattattatttttatttag 59  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  16647983 caccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4206714 - 4206667
Alignment:
Q  14 agaacaccatattttaaggggcaccaaaattattatttttatttagtag 62  Q
    |||||||||| ||||| ||||||||||||||||||| |||| |||||||    
T  4206714 agaacaccatttttta-ggggcaccaaaattattatatttacttagtag 4206667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 1711 - 1805
Alignment:
Q  129 taattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    ||||| |||| ||||||| |||| ||||||| |||||| | ||| ||||||||||||||||||||| ||||||||| |||||   ||||||||||    
T  1711 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 1805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 9774 - 9868
Alignment:
Q  129 taattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaaaa 223  Q
    ||||| |||| ||||||| |||| ||||||| |||||| | ||| ||||||||||||||||||||| ||||||||| |||||   ||||||||||    
T  9774 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 9868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 387 - 487
Alignment:
Q  122 ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaatcttttgcaataaaaaatgcaagaagaaagatattcggataattaa 221  Q
    |||| |||||||| ||| |||| || |||| ||| ||| |||||| | ||| ||| |||| |||||||||||||||||||||| ||||| | ||||||||    
T  387 ctttaattaattcaattgaaaaaatatttttagataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaa 486  T
Q  222 a 222  Q
    |    
T  487 a 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 9717 - 9813
Alignment:
Q  80 atttagtagttagtattaaatagttatatatgtttttaactc-ctttgattaattctattaaaaatatgttttaagagaaccttgatttttaatgaa 175  Q
    ||||||||||||||| || |||| ||||||| ||||||| ||  ||||||||||| |||| | ||||| |||| ||| ||| |||||| | ||||||    
T  9717 atttagtagttagtactatatagatatatatctttttaattcggtttgattaattatattgagaatatatttttagaaaactttgattataaatgaa 9813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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