View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11839_low_8 (Length: 282)
Name: NF11839_low_8
Description: NF11839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11839_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 33356519 - 33356258
Alignment:
| Q |
2 |
aatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaactcttacctgaacacgcacaatatattgatt |
101 |
Q |
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| T |
33356519 |
aatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaactcttacctgaacacacacaatatattgatt |
33356420 |
T |
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| Q |
102 |
cattcaaccatcaaattataattaaaatttcacaaaccatattatattataacaccttaccttggcattcatcagacattttgtttgcctttttgatcct |
201 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33356419 |
cattcaaccatcaaattatatttaaaatttcacaaaccatattatattataacaccttaccttggcattcatcagacattttgtttgcctttttgatcct |
33356320 |
T |
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| Q |
202 |
tcaatatgtatgactatttgtgtgctttttctttctttctttctgcaattcttatgggtttgtgat |
267 |
Q |
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| T |
33356319 |
tcaatatgtatgactatttgtgtgctttttctttct----ttctgcaattcttatgggtttgtgat |
33356258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 33382014 - 33381880
Alignment:
| Q |
7 |
attctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaactcttacctgaacacgcacaatatattgattcattc |
106 |
Q |
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|||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
33382014 |
attctccctctgaattgtagcttctgctacctttccttcaactccaaccaattctggccatgaactcttacctgagcacacacaatatattgattcatta |
33381915 |
T |
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| Q |
107 |
aaccatcaaattataattaaaatttcacaaaccat |
141 |
Q |
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| T |
33381914 |
aaccatcaaattataattaaaatttcacaaaccat |
33381880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 33400279 - 33400144
Alignment:
| Q |
2 |
aatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaactcttacctgaacacgcacaatatattgatt |
101 |
Q |
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||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||||| |
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| T |
33400279 |
aatggattctccctctcaattgtagcttctgctacctttccttccactccaaccaattctggccatgagctcttacctga----gaacacaatattgatt |
33400184 |
T |
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| Q |
102 |
cattcaaccatcaaattataattaaaatttcacaaaccat |
141 |
Q |
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| T |
33400183 |
aattcaaccatcaaattataattaaaatttcactaaccat |
33400144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 33400107 - 33400009
Alignment:
| Q |
149 |
tataacaccttaccttggcattcatca------gacatttt-gtttgcctttttgatccttcaatatgtatgactatttgtgtg-ctttttctttcttt |
239 |
Q |
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|||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33400107 |
tataacaccttacctttgcattcatcatcataagacatttttgtttgcctttttgatccttcaatatgtatgactatttgtgtgcctttttctttcttt |
33400009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 33381842 - 33381757
Alignment:
| Q |
149 |
tataacaccttaccttggcattcatca---gacattttgtttgcctttttgatccttcaatatgtatgactatttgtgtgcttttt |
231 |
Q |
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| T |
33381842 |
tataactccttacctttgcattcatcatcagacatttttttttcctttttgatccttgaatatgtatgactatttgtgtgcctttt |
33381757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 39307042 - 39307175
Alignment:
| Q |
2 |
aatggattctctctttgaattgtagcttctgctacctttccttccactccaaccaactctggccatgaactcttacctgaacacgcacaatatattgatt |
101 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||| |
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| T |
39307042 |
aatggattctcactctgaattgtagcttctgctacctttccttccactccaaccaactctggccatgagttcttacctga----gaacacaatattgatt |
39307137 |
T |
|
| Q |
102 |
cattcaaccatcaaattataattaaaatttcacaaacc |
139 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
39307138 |
aattcaaccatcaaattataattaatatttcacaaacc |
39307175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 39307203 - 39307238
Alignment:
| Q |
148 |
ttataacaccttaccttggcattcatcagacatttt |
183 |
Q |
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| T |
39307203 |
ttataacaccttacctttgcattcatcagacatttt |
39307238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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