View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_10 (Length: 361)
Name: NF11840_high_10
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 41 - 343
Target Start/End: Complemental strand, 52889405 - 52889089
Alignment:
| Q |
41 |
tgttgttcaattgacatatgagggattaaggtgctgaaaatgtcggaaaacatagcattgaaatcggtaatagtaactcgttaa--------------ag |
126 |
Q |
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| T |
52889405 |
tgttgttcaattgacatatgagggattaaggtactgaaaatgtcggaaaacatagcattgaaatcggtaatagtaactcgttaattaaggtttaaacaag |
52889306 |
T |
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| Q |
127 |
tactacnnnnnnnnnnnncaggtgttgaattttgattgggtagatgagaaacatacattgacatcgtttcccgaagcatcggagatagggctgtcatcgg |
226 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52889305 |
tactacaaaaacaaaaaacaggtgttgaattttgattgggtagatgagaaacatacattgacatcgtttcccgaagcatcggagacagggctgtcatcgg |
52889206 |
T |
|
| Q |
227 |
cgaatggcgttcctcggtcagaccaagctttccgaacaccgtcgtaattcaatttcaacaacaatccacttttcaactttggcgattccatttctttcaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52889205 |
cgaatggcgttcctcggtcagaccaagctttccgaacgccgtcgtaattcaatttcaacaacaatccacttttcaactttggcgattccatttctttcaa |
52889106 |
T |
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| Q |
327 |
ttctgcattcagtctct |
343 |
Q |
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||||||||||||||||| |
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| T |
52889105 |
ttctgcattcagtctct |
52889089 |
T |
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