View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_11 (Length: 329)
Name: NF11840_high_11
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 4488378 - 4488688
Alignment:
| Q |
1 |
atctgattcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488378 |
atctgattcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatga |
4488477 |
T |
|
| Q |
101 |
agaacaatatcttacctttctctgctcacacattttctaaaaag-tagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaaca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4488478 |
agaacaatatcttacctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaaca |
4488577 |
T |
|
| Q |
200 |
tcgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggc |
299 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488578 |
tcatcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggc |
4488677 |
T |
|
| Q |
300 |
tatatcataac |
310 |
Q |
| |
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||||||||||| |
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| T |
4488678 |
tatatcataac |
4488688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 1409700 - 1410010
Alignment:
| Q |
1 |
atctgattcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1409700 |
atctgattcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatga |
1409799 |
T |
|
| Q |
101 |
agaacaatatcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaaca |
199 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||| |||||||||| |||||||||| |||||| ||| |
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| T |
1409800 |
agaacaatatcttacctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgctaca |
1409899 |
T |
|
| Q |
200 |
tcgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggc |
299 |
Q |
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||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |
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| T |
1409900 |
tcgtcacgcacttgtgaaattgggagcatatttcccactgcaagtacaaaaatgttgaattatcataacgaaataataatcttgtaaaatcttccattgc |
1409999 |
T |
|
| Q |
300 |
tatatcataac |
310 |
Q |
| |
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||||||||||| |
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| T |
1410000 |
tatatcataac |
1410010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 310
Target Start/End: Original strand, 22621884 - 22622093
Alignment:
| Q |
102 |
gaacaatatcttacctttctctgctcacacattttctaaaaag-tagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
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| T |
22621884 |
gaacaatatcttacctttctatgctcacacatttacttaaaaggtagaagcatttgatttgcctcccactctatttcctttttttacgcagctgcaacat |
22621983 |
T |
|
| Q |
201 |
cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22621984 |
cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccactgct |
22622083 |
T |
|
| Q |
301 |
atatcataac |
310 |
Q |
| |
|
|||| ||||| |
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|
| T |
22622084 |
atatgataac |
22622093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 14244918 - 14244982
Alignment:
| Q |
246 |
caaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcataac |
310 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
14244918 |
caaaaatgttgaattatcataactaaaaattaatcttgtaaaatcttccactgctgtatcataac |
14244982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 6355468 - 6355532
Alignment:
| Q |
246 |
caaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcataac |
310 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||| |
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| T |
6355468 |
caaaaatgttgaattatcataactaaaaattaatctagtaaaatcttccactgctgtatcataac |
6355532 |
T |
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