View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_12 (Length: 271)
Name: NF11840_high_12
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 44316068 - 44316247
Alignment:
| Q |
79 |
ttaattcctctgaaatcaggaattcacaagagaaaagagtaacaaatcatagtcactaatttgaaaattggtgtttgacatttaaacaacaacttcataa |
178 |
Q |
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| T |
44316068 |
ttaattcctctgaaatcaggaattcacaagagaaaagagtaacaaatcatagtcactaatttgaaaattggtgtttgacatttaaacaacaacttcataa |
44316167 |
T |
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| Q |
179 |
tttgcagcacataccttccacatgctgagtgactgtccttgtacaatgcaattgcgtcaatttagtctatgttgatgtcc |
258 |
Q |
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| T |
44316168 |
tttgcatcacataccttccacatgctgagtgactgtccttgtacaatgcaattgcgtcaatttagtctatgttgatgtcc |
44316247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 44315966 - 44316018
Alignment:
| Q |
24 |
tctaattcattgtcctctcaaagcaagactcgaaatacccacattacttcttt |
76 |
Q |
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| T |
44315966 |
tctaattcattgtcctctcaaagcaagactcgaaatacccacattacttcttt |
44316018 |
T |
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