View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_13 (Length: 251)
Name: NF11840_high_13
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_13 |
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| [»] scaffold0352 (1 HSPs) |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 15884 - 16103
Alignment:
| Q |
17 |
gaacatgaaaagaatagcaacaatagaaaataagctttgacaaagtcaccataaaagctacacctttttctaaatcacggcgactcattgtggtttcgat |
116 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
15884 |
gaacatgaaaagaacaacaacaatagaaaataagctttgacaaagtcaccgtaaaagctacacctttttttaaatcacggcgactcattgtggtttcaat |
15983 |
T |
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| Q |
117 |
aaactcaccaagcaaactctaaataagcttcaatagaaaatatacactatattaataaacagatgaacccatacgaatgcgacttattagaaactttcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||||| |
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| T |
15984 |
aaactcaccaagcaaactctaaataagcttcaatagaaaatatacacgatattaataaatagatgaaaccatatgactgcgacttattagaaactttcat |
16083 |
T |
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| Q |
217 |
gggagataataccataggtg |
236 |
Q |
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||||||||||| |||||||| |
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| T |
16084 |
gggagataatatcataggtg |
16103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 25403 - 25189
Alignment:
| Q |
23 |
gaaaagaatagcaacaatagaaaataagctttgacaaagtcaccataaaagctacacctttttctaaatcacggcgactcattgtggtttcgataaactc |
122 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25403 |
gaaaagaacagcaacaatagaaaataagctttgacaaagtcactataaaagctacacctttttctaaatcacggcgactcattgtggttttgataaactc |
25304 |
T |
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| Q |
123 |
accaagcaaactctaaataagcttcaatagaaaatatacactatattaataaa-cagatgaacccatacgaatgcgacttattagaaactttcatgggag |
221 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
25303 |
accaagcaaactctatataagcttctatagaaaatatacacgatattaataaagtagatgaaaccatacgactgcaacttattagaaactttcatgggag |
25204 |
T |
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| Q |
222 |
ataataccataggtg |
236 |
Q |
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||||||||||||||| |
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| T |
25203 |
ataataccataggtg |
25189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 29885852 - 29885638
Alignment:
| Q |
23 |
gaaaagaatagcaacaatagaaaataagctttgacaaagtcaccataaaagctacacctttttctaaatcacggcgactcattgtggtttcgataaactc |
122 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29885852 |
gaaaagaacagcaacaatagaaaataagctttgacaaagtcactataaaagctacacctttttctaaatcacggcgactcattgtggttttgataaactc |
29885753 |
T |
|
| Q |
123 |
accaagcaaactctaaataagcttcaatagaaaatatacactatattaataaa-cagatgaacccatacgaatgcgacttattagaaactttcatgggag |
221 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
29885752 |
accaagcaaactctatataagcttctatagaaaatatacacgatattaataaagtagatgaaaccatacgactgcaacttattagaaactttcatgggag |
29885653 |
T |
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| Q |
222 |
ataataccataggtg |
236 |
Q |
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||||||||||||||| |
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| T |
29885652 |
ataataccataggtg |
29885638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 22291648 - 22291747
Alignment:
| Q |
140 |
taagcttcaatagaaaatatacactatattaataaacagatgaacccatacgaatg---cgacttattagaaactttcatgggagataataccataggtg |
236 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||| |||||| | || | |||||| |||||||||||| |||||||||||| |||||| |
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| T |
22291648 |
taagcttcaatagaaaatatacacgatattataaaacagatgaaaccatacaattgcaacaacttatcagaaactttcatcggagataataccttaggtg |
22291747 |
T |
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