View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_3 (Length: 728)
Name: NF11840_high_3
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 44232826 - 44232112
Alignment:
| Q |
18 |
agtaattcaatacagttatgccccctctaagagagaataactattttttattgcttcaatattggaataaatactaggcgaaaaagatgtaaatgctata |
117 |
Q |
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| T |
44232826 |
agtaattcaatacagttatgccccctctaagagagaataactattttttattgcttcaatattggaataaatactaggcgaaaaagatataaatgctata |
44232727 |
T |
|
| Q |
118 |
atcattcaaaaattagtattttagttaaaacactttatgactttgttgaggagctaagatcctctccatctccgataataaatgacaatgtttattattc |
217 |
Q |
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|||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44232726 |
atcattcaaaaattaggatgttacttaaaacagtttatgactttgttgaggagctaagatcctctccatctccgataataaatgacaatgtttattattc |
44232627 |
T |
|
| Q |
218 |
tctccgttttaaaatgaactttgttgaagtttttacaaaatggagagaatct-aactctttgttgacacaatgacattgaacttgataaaactgaatttt |
316 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44232626 |
tctccgttttaaaatgaacttcatttaagtttttacaaaatggagagaatctcaactctttgttgacacaatgacattgaactagataaaactgaatttt |
44232527 |
T |
|
| Q |
317 |
gacatgtaaatttctcgttgaattcaataatatgccaaattctctctcaatt----------------tatgaccatgttagtcgtttatgtttcgtaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44232526 |
gacatgtaaatttctcgttgaattcaataatatgccaaattctctctcaattactgtttgtgtttatttatgaccatgttagtcgtttatgtttcgtaag |
44232427 |
T |
|
| Q |
401 |
aaactggcgggaaaaaacaagaacaaataggtggggaaaaacgattcgttgtggaattggttcaacaagtggtattgattcccatgcaactatcatcggt |
500 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44232426 |
aaactggcgggaaaaaacaagaacaaataggcggggaaaaacgattcgttgtggaattggttcaacaagtggtattgattcccatgcaactatcatcggt |
44232327 |
T |
|
| Q |
501 |
ttatcctcattcctctgactcaaaaggagtaggctcatgcccttgctataccctaaagccaagcagaggagagaagaaacctccaccttctaatgcaaat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44232326 |
ttatcctcattcctctgactcaaaaggagtaggctcatgcccttgctataccctaaagccaagcagaggagagaagaaacctccaccttctaatgcaaat |
44232227 |
T |
|
| Q |
601 |
atcacgagttctgctcattggcaagctttaaaatgatttctttatgtga----ctctctcctcgtagaagaaccaaagctacaaccttttcaactaacaa |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44232226 |
atcacgagttctgctcattggcaagctttaaaatgatttctttatgtgactcgctctctcctcgtagaagaaccaaagctacaaccttttcaactaacaa |
44232127 |
T |
|
| Q |
697 |
gacatatcaacgatc |
711 |
Q |
| |
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||||||||||||||| |
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| T |
44232126 |
gacatatcaacgatc |
44232112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 485 - 690
Target Start/End: Complemental strand, 44226404 - 44226204
Alignment:
| Q |
485 |
tgcaactatcatcggtttatcctcattcctctgactcaaaaggagtaggctcatgcccttgctataccctaaagccaagcagaggagagaagaaacctcc |
584 |
Q |
| |
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||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| | || ||||||||| ||||| |
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| T |
44226404 |
tgcaactctcatgggtttatcctcattcctctgacccaaaaggagtaggctcaggcccttgctataccctgaagccga----agcagagaagaatcctcc |
44226309 |
T |
|
| Q |
585 |
accttctaatgcaaatatcacgagttctgctcattggcaagctttaaaatgatttctttatgtgactctctcctcgtagaagaaccaaagctacaacctt |
684 |
Q |
| |
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|||||||| |||||||| || ||||||||||||||||| || | ||||||||| | ||| | ||| ||||| ||||||||| || ||||||||||| |
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| T |
44226308 |
accttctactgcaaataacatcagttctgctcattggcacgccat-aaatgatttttatatatcacttcctccttttagaagaacaaatgctacaacctt |
44226210 |
T |
|
| Q |
685 |
ttcaac |
690 |
Q |
| |
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|||||| |
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| T |
44226209 |
ttcaac |
44226204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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