View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_high_9 (Length: 368)
Name: NF11840_high_9
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 45422725 - 45422395
Alignment:
| Q |
11 |
cagatatatgatcttatttttgagagaaacaaatatctatcttattttcggatatgttgtnnnnnnnnn-cattattttcagatatatcgaactatagac |
109 |
Q |
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| T |
45422725 |
cagatatatgatcttatttttgagagaaacaaatatctatcttattttcggatatattgtaaaaaaaaaacattattttcagatatatcgaactatagac |
45422626 |
T |
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| Q |
110 |
aatgtgagtcgtatctatctggtattagctttgcgtat----ctatcatgatatcatcactgttgtagtttattcttcagtcacgcttcggtgaagcgta |
205 |
Q |
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| T |
45422625 |
aatgtgagtcgtatctatctggtattagctttgcgtatgtatctatcatgatatcatcactgttgtagtttattcttcagtcacgcttcggtgaagctta |
45422526 |
T |
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| Q |
206 |
cttgcacagctgatatcattctctgtatcccccatacataatccacaaaggcatcatcattttttggtgttgaattattcgcaatgtttgaagtatcaac |
305 |
Q |
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| T |
45422525 |
cttgcacagctgatatcattctctgtatcccccatacataatccacaaaggcatcatcattttttggtgttgaattattcgcaatgtttgaagtatcaac |
45422426 |
T |
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| Q |
306 |
aagccaatttgattttgatatctactaagaa |
336 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45422425 |
aagccaatttgattttgatatctactaagaa |
45422395 |
T |
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