View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11840_low_1 (Length: 970)

Name: NF11840_low_1
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11840_low_1
NF11840_low_1
[»] chr4 (15 HSPs)
chr4 (88-311)||(11801789-11802026)
chr4 (22-248)||(11807183-11807409)
chr4 (24-238)||(11838457-11838671)
chr4 (22-253)||(11855727-11855958)
chr4 (22-234)||(11430778-11430990)
chr4 (22-234)||(11564476-11564688)
chr4 (684-808)||(11802021-11802145)
chr4 (684-796)||(11431188-11431300)
chr4 (684-796)||(11564166-11564278)
chr4 (701-813)||(11841933-11842045)
chr4 (701-813)||(11856325-11856437)
chr4 (737-793)||(11808050-11808106)
chr4 (863-906)||(47119012-47119055)
chr4 (868-930)||(21157753-21157815)
chr4 (864-934)||(29778776-29778846)
[»] chr2 (5 HSPs)
chr2 (864-939)||(11513879-11513953)
chr2 (868-909)||(5043604-5043645)
chr2 (863-906)||(18066108-18066151)
chr2 (864-927)||(43141852-43141915)
chr2 (864-906)||(25800810-25800852)
[»] chr1 (14 HSPs)
chr1 (874-930)||(45205059-45205115)
chr1 (871-909)||(17422982-17423020)
chr1 (864-906)||(25006081-25006123)
chr1 (864-904)||(28467356-28467396)
chr1 (864-899)||(7218128-7218163)
chr1 (868-927)||(15515526-15515585)
chr1 (867-906)||(25005844-25005883)
chr1 (864-899)||(30371129-30371164)
chr1 (868-930)||(8130421-8130483)
chr1 (868-906)||(12564921-12564959)
chr1 (864-930)||(15579463-15579529)
chr1 (864-906)||(17269231-17269273)
chr1 (864-905)||(27738228-27738269)
chr1 (868-929)||(46980153-46980214)
[»] chr8 (9 HSPs)
chr8 (864-906)||(1561255-1561297)
chr8 (864-906)||(2091742-2091784)
chr8 (864-930)||(7645959-7646025)
chr8 (864-906)||(9834836-9834878)
chr8 (865-905)||(7514560-7514600)
chr8 (865-909)||(31884576-31884620)
chr8 (864-906)||(34770873-34770915)
chr8 (863-928)||(24558833-24558898)
chr8 (866-923)||(41208868-41208925)
[»] chr3 (6 HSPs)
chr3 (870-930)||(27792859-27792919)
chr3 (867-905)||(41057022-41057060)
chr3 (862-899)||(10132772-10132809)
chr3 (861-930)||(22214682-22214751)
chr3 (868-905)||(28306143-28306180)
chr3 (868-909)||(43875633-43875674)
[»] chr7 (8 HSPs)
chr7 (868-927)||(27481320-27481379)
chr7 (865-936)||(27548245-27548316)
chr7 (864-931)||(30812129-30812196)
chr7 (863-930)||(47177616-47177683)
chr7 (864-906)||(18516296-18516338)
chr7 (864-906)||(47046155-47046197)
chr7 (864-909)||(1417245-1417290)
chr7 (869-930)||(11208435-11208496)
[»] chr5 (3 HSPs)
chr5 (864-927)||(29054889-29054952)
chr5 (864-930)||(10272454-10272520)
chr5 (864-905)||(19138767-19138808)
[»] chr6 (4 HSPs)
chr6 (868-930)||(1275134-1275196)
chr6 (864-906)||(4006695-4006737)
chr6 (865-899)||(9668039-9668073)
chr6 (864-909)||(5623137-5623182)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 4e-84; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 11801789 - 11802026
Alignment:
Q  88 actcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgtta 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11801789 actcctccaatttcggttagtgcatcacgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgtta 11801888  T
Q  188 agctctcgctagccaccgcaaactcagctagtccgcctccatactgtcattcagcataacaggaaatgga--------------cattgtaattaatatt 273  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |              |||||||||||||| |    
T  11801889 agctctctctagccaccgcaaactcagctagtccacctccatactgtcatttagcataacaggaaatgcacattggattataatcattgtaattaataat 11801988  T
Q  274 ctggattatgaattaaaaatagtcggattagagatagg 311  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  11801989 ctggattatgaattgaaaatagttggattagagatagg 11802026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 11807183 - 11807409
Alignment:
Q  22 acacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagcttgactcctccaatttcggttagtgcatcatgagctg 121  Q
    |||||||| ||||||||||||| ||| |||||  ||||||| || |  |||||||||||||||||  |||||||||||||||| || |||| | ||||||    
T  11807183 acacctacaccacctgaagcagaagtaaccaaagcgttcttcggctcgccagtcccatcaagcttagctcctccaatttcggtaagggcattacgagctg 11807282  T
Q  122 tgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgttaagctctcgctagccaccgcaaactcagctagtcc 221  Q
    ||||||| |||||||||||||| | ||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  11807283 tgagaccagctataggtaaaccggaagcttcagcagttgagacttcagatggtctggcaactgttaagctctcgctagccaccgcaaactcagatagtcc 11807382  T
Q  222 gcctccatactgtcattcagcataaca 248  Q
     |||||||||||||||||| |||||||    
T  11807383 acctccatactgtcattcaacataaca 11807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 11838457 - 11838671
Alignment:
Q  24 acctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagcttgactcctccaatttcggttagtgcatcatgagctgtg 123  Q
    |||||| ||||||||||||||||||||||| || |||||  | |  ||||||||||||||||| | |||||| ||||| || || |||||| |||||||     
T  11838457 acctacaccacctgaagcagcagttaccaaaacattcttctgctcgccagtcccatcaagcttaattcctccgatttctgtgagggcatcacgagctgtt 11838556  T
Q  124 agaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgttaagctctcgctagccaccgcaaactcagctagtccgc 223  Q
    | |||||| ||||||||||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||| |||||||| ||||||||||||||||| |    
T  11838557 aaaccggcaataggtaaacccgcagcttcagcagctgagacttcaggtggtctggtagctgttaagctctcactagccacggcaaactcagctagtccac 11838656  T
Q  224 ctccatactgtcatt 238  Q
    |||||||||||||||    
T  11838657 ctccatactgtcatt 11838671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 11855727 - 11855958
Alignment:
Q  22 acacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagcttgactcctccaatttcggttagtgcatcatgagctg 121  Q
    |||||||| ||||||||||||||||||||||| | ||||||||| | |||||||||||||| ||| ||||| |||| || ||| ||  ||||| ||||||    
T  11855727 acacctacaccacctgaagcagcagttaccaaaatgttcttgggctcaccagtcccatcaaacttaactcccccaacttgggtgagcacatcacgagctg 11855826  T
Q  122 tgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgttaagctctcgctagccaccgcaaactcagctagtcc 221  Q
    |  ||||||||| ||||||||  || |||||||| || || |||||||||||||| ||||||||| |||||||   | ||||||||||||||||||||||    
T  11855827 tttgaccggctacaggtaaactcgctgcttcagctgcggagacttcagatggtctggcagctgttgagctctcagcaaccaccgcaaactcagctagtcc 11855926  T
Q  222 gcctccatactgtcattcagcataacaggaaa 253  Q
     ||| |||||||||||||| ||  ||||||||    
T  11855927 acctgcatactgtcattcaacacgacaggaaa 11855958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 11430778 - 11430990
Alignment:
Q  22 acacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagcttgactcctccaatttcggttagtgcatcatgagctg 121  Q
    ||||||||||||||||||||||| |||||||  | ||| ||||||| |||||| | |||||| || | |||| | ||||  || |  ||||||||||| |    
T  11430778 acacctacgccacctgaagcagcggttaccagaatgtttttgggttcaccagtacgatcaagtttaattcctgccatttttgtgatggcatcatgagccg 11430877  T
Q  122 tgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgttaagctctcgctagccaccgcaaactcagctagtcc 221  Q
     ||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  11430878 cgagaccggctacaggtaaaccggcaccttcagcagctgagacttcagatggtctcaaagttgttaagctctcgctagccaccgcaaactcagctagtcc 11430977  T
Q  222 gcctccatactgt 234  Q
     || |||| ||||    
T  11430978 acccccatcctgt 11430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 11564688 - 11564476
Alignment:
Q  22 acacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagcttgactcctccaatttcggttagtgcatcatgagctg 121  Q
    ||||||||||||||||||||||| |||||||  | ||| ||||||| |||||| | |||||| || | |||| | ||||  || |  ||||||||||| |    
T  11564688 acacctacgccacctgaagcagcggttaccagaatgtttttgggttcaccagtacgatcaagtttaattcctgccatttttgtgatggcatcatgagccg 11564589  T
Q  122 tgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgttaagctctcgctagccaccgcaaactcagctagtcc 221  Q
     ||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||   || |||||||||||||||||||||||||||||||||||||||    
T  11564588 cgagaccggctacaggtaaaccggcaccttcagcagctgagacttcagatggtctcaaagttgttaagctctcgctagccaccgcaaactcagctagtcc 11564489  T
Q  222 gcctccatactgt 234  Q
     || |||| ||||    
T  11564488 acccccatcctgt 11564476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 684 - 808
Target Start/End: Original strand, 11802021 - 11802145
Alignment:
Q  684 gatacgtactagagtgttgagtttagcaataactttatctccaactctaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtg 783  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||||| |||||||||||||||||||||    
T  11802021 gataggtactagattgttgagtttagcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatcagtg 11802120  T
Q  784 cctgaatcaaagtaccaagatcaaa 808  Q
    ||||||||||| | |||||| ||||    
T  11802121 cctgaatcaaattcccaagagcaaa 11802145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 684 - 796
Target Start/End: Original strand, 11431188 - 11431300
Alignment:
Q  684 gatacgtactagagtgttgagtttagcaataactttatctccaactctaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtg 783  Q
    ||||| |||| || |||||||||||||||||||||| ||||||||| | ||||| || ||||||| ||||| |||||||||||||||||||||||| |||    
T  11431188 gatacttacttgattgttgagtttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtg 11431287  T
Q  784 cctgaatcaaagt 796  Q
    |||||||||||||    
T  11431288 cctgaatcaaagt 11431300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 684 - 796
Target Start/End: Complemental strand, 11564278 - 11564166
Alignment:
Q  684 gatacgtactagagtgttgagtttagcaataactttatctccaactctaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtg 783  Q
    ||||| |||| || |||||||||||||||||||||| ||||||||| | ||||| || ||||||| ||||| |||||||||||||||||||||||| |||    
T  11564278 gatacttacttgattgttgagtttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtg 11564179  T
Q  784 cctgaatcaaagt 796  Q
    |||||||||||||    
T  11564178 cctgaatcaaagt 11564166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 701 - 813
Target Start/End: Original strand, 11841933 - 11842045
Alignment:
Q  701 tgagtttagcaataactttatctccaactctaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtacca 800  Q
    ||||||||||||||||||| || |||  | | ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||    
T  11841933 tgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtccaacctctaccacctctccagctacatcagtgcctgaatcaaagtccca 11842032  T
Q  801 agatcaaaggaat 813  Q
    ||| |||||||||    
T  11842033 agagcaaaggaat 11842045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 701 - 813
Target Start/End: Original strand, 11856325 - 11856437
Alignment:
Q  701 tgagtttagcaataactttatctccaactctaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtacca 800  Q
    ||||||| | ||||||||| ||||||||| ||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| |||    
T  11856325 tgagtttggtaataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtccca 11856424  T
Q  801 agatcaaaggaat 813  Q
    ||| |||| ||||    
T  11856425 agagcaaaagaat 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 737 - 793
Target Start/End: Original strand, 11808050 - 11808106
Alignment:
Q  737 ccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaa 793  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11808050 ccttgacttgtggtccaacttctactacctctcctgctacatcagtgcctgaatcaa 11808106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 863 - 906
Target Start/End: Complemental strand, 47119055 - 47119012
Alignment:
Q  863 taaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  47119055 taaattgttttcatataagctataagttgtattcatatgctatc 47119012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 930
Target Start/End: Original strand, 21157753 - 21157815
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||| ||||||| ||| ||||||||||||||||| || | |  |||||||||||||||    
T  21157753 tgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatggaaataagct 21157815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 934
Target Start/End: Original strand, 29778776 - 29778846
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagcttgaa 934  Q
    ||||||||||||||||||||  |||||||||||||| |||| | || | |  ||||| |||||||||||||    
T  29778776 aaattgttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagcttgaa 29778846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 864 - 939
Target Start/End: Original strand, 11513879 - 11513953
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagcttgaaaatag 939  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| | |  || ||||||||||| |||||||||    
T  11513879 aaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagc-tgaaaatag 11513953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 868 - 909
Target Start/End: Complemental strand, 5043645 - 5043604
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatg 909  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  5043645 tgttttcatataagctagaagttgttttcataagctatcatg 5043604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 906
Target Start/End: Original strand, 18066108 - 18066151
Alignment:
Q  863 taaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||    
T  18066108 taaattgttttcatataagctataagctgttttcataagctatc 18066151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 927
Target Start/End: Original strand, 43141852 - 43141915
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataa 927  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||| || | | |||||||||||||    
T  43141852 aaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataa 43141915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 25800810 - 25800852
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||    
T  25800810 aaattgttttcatataagctataagctgttttcataagctatc 25800852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 874 - 930
Target Start/End: Original strand, 45205059 - 45205115
Alignment:
Q  874 catataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||||| |||||||||||||| ||||||||||| | || |||||||||||||    
T  45205059 catataagctagaagttgttttcataagctatcatgtagagttcatggaaataagct 45205115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 871 - 909
Target Start/End: Complemental strand, 17423020 - 17422982
Alignment:
Q  871 tttcatataagctacaagttgttttcatatgctatcatg 909  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17423020 tttcatataagctataagttgttttcatatgctatcatg 17422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 906
Target Start/End: Complemental strand, 25006123 - 25006081
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  25006123 aaattgttttcatataagctataagttgttttcataagctatc 25006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 904
Target Start/End: Complemental strand, 28467396 - 28467356
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgcta 904  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  28467396 aaattattttcatataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 899
Target Start/End: Complemental strand, 7218163 - 7218128
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcata 899  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7218163 aaattgttttcatataagctataagttgttttcata 7218128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 927
Target Start/End: Original strand, 15515526 - 15515585
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataa 927  Q
    ||||||| ||||||||| |||||||||||||| | ||||||| |||  ||||||||||||    
T  15515526 tgttttcgtataagctataagttgttttcataagttatcatggatagcttatggaaataa 15515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 867 - 906
Target Start/End: Complemental strand, 25005883 - 25005844
Alignment:
Q  867 ttgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  25005883 ttgttttcatataagctataagttgttttcataagctatc 25005844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 899
Target Start/End: Original strand, 30371129 - 30371164
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcata 899  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30371129 aaattgttttcatataagctataagttgttttcata 30371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 930
Target Start/End: Original strand, 8130421 - 8130483
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    |||||||| |||||||| |||||||||||||| ||||||||| | |  ||||||||| |||||    
T  8130421 tgttttcacataagctataagttgttttcataagctatcatggaaaacttatggaaacaagct 8130483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 906
Target Start/End: Complemental strand, 12564959 - 12564921
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  12564959 tgttttcatataagctataagttgttttcataagctatc 12564921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 930
Target Start/End: Original strand, 15579463 - 15579529
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||||||| ||||||| ||| |||| || || ||||||||||  | ||||||||||||||||    
T  15579463 aaattgttttcatgtaagctataagctgttctcgtaagctatcatgttgagtttatggaaataagct 15579529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 17269231 - 17269273
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||||||||| | |||||||||||||| ||||||    
T  17269231 aaattgttttcatataagcaataagttgttttcataagctatc 17269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 905
Target Start/End: Complemental strand, 27738269 - 27738228
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctat 905  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27738269 aaattgttttcatataagctataatttgttttcataagctat 27738228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 929
Target Start/End: Complemental strand, 46980214 - 46980153
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagc 929  Q
    |||||||||||||| || || |||||||||||  || | ||||||| |||||||||||||||    
T  46980214 tgttttcatataagttataaattgttttcataaactgttatgtatagtttatggaaataagc 46980153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 1561255 - 1561297
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  1561255 aaattgttttaatataagctacaagttgttttcataagctatc 1561297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 2091742 - 2091784
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  2091742 aaattgttttaatataagctacaagttgttttcataagctatc 2091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 930
Target Start/End: Original strand, 7645959 - 7646025
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||||||| ||||||| |||||||||||||| |||| | |||| |  |||||||||||||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaataagct 7646025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 906
Target Start/End: Complemental strand, 9834878 - 9834836
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataagctatc 9834836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 905
Target Start/End: Original strand, 7514560 - 7514600
Alignment:
Q  865 aattgttttcatataagctacaagttgttttcatatgctat 905  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  7514560 aattgttttcatataagctacaagctgttttcataagctat 7514600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 909
Target Start/End: Original strand, 31884576 - 31884620
Alignment:
Q  865 aattgttttcatataagctacaagttgttttcatatgctatcatg 909  Q
    |||||||||||||||||||| || ||||||||||| |||||||||    
T  31884576 aattgttttcatataagctataaattgttttcataagctatcatg 31884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 34770873 - 34770915
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  34770873 aaattgttttcatttaagctataagttgttttcataagctatc 34770915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 928
Target Start/End: Original strand, 24558833 - 24558898
Alignment:
Q  863 taaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataag 928  Q
    |||||| ||||| ||||||||| |||||||||||||| |||||| || | |||| ||| |||||||    
T  24558833 taaattattttcgtataagctataagttgttttcataagctatcttggagacttaatgtaaataag 24558898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 866 - 923
Target Start/End: Original strand, 41208868 - 41208925
Alignment:
Q  866 attgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaa 923  Q
    ||||||||||||||||||| || ||||||||| |||||||| || | | |||||||||    
T  41208868 attgttttcatataagctataacttgttttcacatgctatcctgaagagtttatggaa 41208925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 870 - 930
Target Start/End: Original strand, 27792859 - 27792919
Alignment:
Q  870 ttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    |||||||||||||| |||||||||||||||  |||||||||| |  |||| ||||||||||    
T  27792859 ttttcatataagctgcaagttgttttcataaactatcatgtagagcttatagaaataagct 27792919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 867 - 905
Target Start/End: Original strand, 41057022 - 41057060
Alignment:
Q  867 ttgttttcatataagctacaagttgttttcatatgctat 905  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  41057022 ttgttttcatataagctataagttgttttcataagctat 41057060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 862 - 899
Target Start/End: Complemental strand, 10132809 - 10132772
Alignment:
Q  862 ataaattgttttcatataagctacaagttgttttcata 899  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  10132809 ataaattgtttttatataagatacaagttgttttcata 10132772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 930
Target Start/End: Complemental strand, 22214751 - 22214682
Alignment:
Q  861 tataaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||| |||||||||||||| ||| |||||||||||||| |||||| |  | || ||| |||||||||||    
T  22214751 tataagttgttttcatataacctataagttgttttcataagctatcctagagacattacggaaataagct 22214682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 905
Target Start/End: Original strand, 28306143 - 28306180
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctat 905  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  28306143 tgttttcatataagttacaagttgttttcataagctat 28306180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 909
Target Start/End: Original strand, 43875633 - 43875674
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatg 909  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  43875633 tgttctcatataagctataagttgttttcataagctatcatg 43875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 927
Target Start/End: Complemental strand, 27481379 - 27481320
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataa 927  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||| |||  ||||||||||||    
T  27481379 tgtttccatataagctataagttattttcataagctatcatggatagcttatggaaataa 27481320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 936
Target Start/End: Original strand, 27548245 - 27548316
Alignment:
Q  865 aattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagcttgaaaa 936  Q
    |||||||||||| ||||||| ||| |||||||||| |||||| || |||  ||||||| ||||||| |||||    
T  27548245 aattgttttcatttaagctataagctgttttcataagctatcttggataacttatggagataagctggaaaa 27548316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 931
Target Start/End: Original strand, 30812129 - 30812196
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagctt 931  Q
    ||||||||||| ||||||||| ||| |||||||||  ||||||||| | |  ||||||||||||||||    
T  30812129 aaattgttttcgtataagctataagctgttttcattagctatcatggagagcttatggaaataagctt 30812196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 930
Target Start/End: Original strand, 47177616 - 47177683
Alignment:
Q  863 taaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    |||||||||||||||||||||| ||| |||||||| | |||||| || | | |||||| |||||||||    
T  47177616 taaattgttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataagct 47177683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Complemental strand, 18516338 - 18516296
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||    
T  18516338 aaattgtgttcatataagctataagttgtttccatatgctatc 18516296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Complemental strand, 47046197 - 47046155
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  47046197 aaattgttttcatataagctccgagttgttttcataagctatc 47046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 909
Target Start/End: Original strand, 1417245 - 1417290
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatg 909  Q
    ||||||||||||||||||| | |||||||||||||| |||| ||||    
T  1417245 aaattgttttcatataagcaataagttgttttcataagctagcatg 1417290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 869 - 930
Target Start/End: Original strand, 11208435 - 11208496
Alignment:
Q  869 gttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    |||||||||||| ||| | |||||||||||| |||||| ||  || ||||||||||||||||    
T  11208435 gttttcatataaactatatgttgttttcataagctatcttgggtattttatggaaataagct 11208496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 927
Target Start/End: Original strand, 29054889 - 29054952
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataa 927  Q
    |||||| |||||||||||||| ||||||||| ||||  |||||||||| |  ||||||||||||    
T  29054889 aaattgctttcatataagctataagttgtttccataaactatcatgtagagcttatggaaataa 29054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 930
Target Start/End: Complemental strand, 10272520 - 10272454
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||||| ||||||||| |||||||||||||| || ||| || | | |||||| |||||||||    
T  10272520 aaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagct 10272454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 905
Target Start/End: Complemental strand, 19138808 - 19138767
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctat 905  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  19138808 aaattgttttcagataagctataagttgttttcataagctat 19138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 930
Target Start/End: Original strand, 1275134 - 1275196
Alignment:
Q  868 tgttttcatataagctacaagttgttttcatatgctatcatgtatactttatggaaataagct 930  Q
    ||||||||||||||||| ||| |||||||||||| |||| || | |  |||||||||||||||    
T  1275134 tgttttcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagct 1275196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 4006695 - 4006737
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatc 906  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  4006695 aaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 865 - 899
Target Start/End: Complemental strand, 9668073 - 9668039
Alignment:
Q  865 aattgttttcatataagctacaagttgttttcata 899  Q
    ||||||||||||||||||||||| |||||||||||    
T  9668073 aattgttttcatataagctacaatttgttttcata 9668039  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 909
Target Start/End: Original strand, 5623137 - 5623182
Alignment:
Q  864 aaattgttttcatataagctacaagttgttttcatatgctatcatg 909  Q
    |||| |||||||||||| ||| |||||||||||||| |||||||||    
T  5623137 aaatagttttcatataaactataagttgttttcataagctatcatg 5623182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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