View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_low_13 (Length: 326)
Name: NF11840_low_13
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4488402 - 4488186
Alignment:
| Q |
1 |
agaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggt |
100 |
Q |
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| T |
4488402 |
agaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtgatgaagtatgctataacgaaattggtcgttggagcttcaatgggt |
4488303 |
T |
|
| Q |
101 |
ggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaagatcaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
4488302 |
ggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcaccaatagtgctaaaatcaaact |
4488203 |
T |
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| Q |
201 |
ggattcttcctcaaata |
217 |
Q |
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||||||||||||||||| |
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| T |
4488202 |
ggattcttcctcaaata |
4488186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
| Q |
93 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag |
192 |
Q |
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| T |
19023911 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag |
19023812 |
T |
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| Q |
193 |
atcaaactggattcttcctcaaata |
217 |
Q |
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| T |
19023811 |
atcaaactggattcatcctcaaata |
19023787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1409724 - 1409606
Alignment:
| Q |
1 |
agaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
1409724 |
agaagttgtagtgattgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagcttcaaccggt |
1409625 |
T |
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| Q |
101 |
ggcttatttaaaaggtact |
119 |
Q |
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| T |
1409624 |
ggcttatttaaaaggtact |
1409606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
| Q |
158 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
217 |
Q |
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| T |
1409608 |
actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata |
1409549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 1402857 - 1402810
Alignment:
| Q |
8 |
gtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta |
55 |
Q |
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| T |
1402857 |
gtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta |
1402810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
| Q |
158 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
217 |
Q |
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| T |
14244914 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
14244855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
| Q |
158 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
217 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6355464 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
6355405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 40682237 - 40682322
Alignment:
| Q |
9 |
tagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca |
94 |
Q |
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| T |
40682237 |
tagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca |
40682322 |
T |
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