View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_low_17 (Length: 244)
Name: NF11840_low_17
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 30128540 - 30128326
Alignment:
| Q |
14 |
acagacaaacacagcatgttgtagccgaaaccagaaccccgtgaaggccacaaaacaagacagtacaacagcaaaacaaccaccagaaacagaacctgag |
113 |
Q |
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| T |
30128540 |
acagacaaacacagcatgttgtagccgaaaccagaaccccgtgaaggccacaaaacaagacagtacaacagcaaaacaaccaccagaaacagaacctgag |
30128441 |
T |
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| Q |
114 |
aaacaaggcctcagacaatcttgctcgatcgaatgactaagaaaaaccagaacagaatctggagcaaacaacagaagaagcgcagacatttgagggataa |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128440 |
aaacaaggcctcagacaatcttgctcggtcgaatgactaagaaaaaccagaacagaatctggagcaaacaacagaagaagcgcagacatttgagggataa |
30128341 |
T |
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| Q |
214 |
tggggcacacactac |
228 |
Q |
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||||||||||||||| |
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| T |
30128340 |
tggggcacacactac |
30128326 |
T |
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