View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_low_2 (Length: 928)
Name: NF11840_low_2
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 25275859 - 25276422
Alignment:
| Q |
18 |
gtgtttgctcgactccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25275859 |
gtgtttgctcgactccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaat |
25275958 |
T |
|
| Q |
118 |
tgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaatttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25275959 |
tgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtaggcgcatcagaatgttaagctgcaactgttgccgtaatttca |
25276058 |
T |
|
| Q |
218 |
gagttaaccatgacttctaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacctcgac |
317 |
Q |
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| T |
25276059 |
gagttaaccatgacttgtaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccactcataatcaacc----- |
25276153 |
T |
|
| Q |
318 |
aggaaaagcaaaaccttccctttccaccatgaattcgtagatgagacgccttgaaatatcaatatccaccagcacctgtgcgtaatggccaaatgtgcgt |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
25276154 |
-----------aaccttccctttccaccatgacttcgtagatgagacgccttgaaatatcaatatccaccagcacctgcgtgtaatggccaaatgtgcgt |
25276242 |
T |
|
| Q |
418 |
ttctgagttgcggcgtcaataataagcggagtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatcaaaggtttttccaatat |
517 |
Q |
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| T |
25276243 |
ttctgagtttcggcgtcaataataagccgggtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatcaaaggtttttccaatat |
25276342 |
T |
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| Q |
518 |
cccacacctcacgtgtcaatgtttgacaggtatatttaaattactagaaatgttaatgtatcggtatcttaagttcaaca |
597 |
Q |
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| T |
25276343 |
cccacacctcacgtgtcagtgtttgacaggtatatttaaattactagaaatgttaatgtatcagtatcttatgttcaaca |
25276422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 608 - 781
Target Start/End: Original strand, 25276531 - 25276704
Alignment:
| Q |
608 |
cattacatggatatgtgacgcacttatctgtttttctctatatgggtatttgtgatgtgtgacttgatggagtaaaagcttcgtacgagtgcaattggag |
707 |
Q |
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| T |
25276531 |
cattacatggatatgtgacacacttaactgtttttctctataagggtatttgtgatgtgtgacttgatggagtaaaagcttcgtacgagtgcaattggag |
25276630 |
T |
|
| Q |
708 |
aaccattgtcttatgttggcatttactttgtttttccaagttgccaactcagtagtgagtagtggccagaaggc |
781 |
Q |
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| T |
25276631 |
aaccattgtcttatgttggcatttactttgtttttccaagttgccaactcagtagtgagtagtagccagaaggc |
25276704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 5570245 - 5570497
Alignment:
| Q |
18 |
gtgtttgctcgactccaagtgaatgcacgtcattatgagccactacagtagctaattccaacacgggagaggcaggttgaggaaacaaaccctgttgaat |
117 |
Q |
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|
||||||||||||||| ||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5570245 |
gtgtttgctcgactctaagtgaatgcacgtcatcgtgcgcaactacagtagataattccaacacgggagaggcaggttgaggcaacaaaccctgttgaat |
5570344 |
T |
|
| Q |
118 |
tgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaactgttgccgtaatttca |
217 |
Q |
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|||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
5570345 |
tgcgtccgaaatattt-----tgcaaagctaaaagtattggcaataacatcatgagtaggcgcatcagaatgtgaagttgcgactgttgccgtaatttca |
5570439 |
T |
|
| Q |
218 |
gagttaacca-tgacttctaaaaagcgagcgaggaatcaataccaaggggatttttgc |
274 |
Q |
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|||||||||| |||||||| |||||||| |||||| || | |||||||||||||||| |
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| T |
5570440 |
gagttaaccattgacttctcaaaagcgaatgaggaaccattgccaaggggatttttgc |
5570497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 791 - 910
Target Start/End: Original strand, 36726478 - 36726597
Alignment:
| Q |
791 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacatttttgaaggctttgatcaccaattttgaatctacttccagccat |
890 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
36726478 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacattttttaaggctttgatcaccaattctgaatctgcttccagccat |
36726577 |
T |
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| Q |
891 |
aaattcgaccattgatgtga |
910 |
Q |
| |
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|| ||||||| |||||||| |
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| T |
36726578 |
aatttcgaccgctgatgtga |
36726597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 454
Target Start/End: Complemental strand, 17705253 - 17705181
Alignment:
| Q |
382 |
tccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaa |
454 |
Q |
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|||||||||||| | || ||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| |
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| T |
17705253 |
tccaccagcacccgcgcataatggccaaaggtgcgtttctgagttgcggcatcaatgatgagaggagtaccaa |
17705181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 23869337 - 23869413
Alignment:
| Q |
379 |
atatccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaat |
455 |
Q |
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||||||||||||||| | | ||||||||||| |||||||||||||||||| ||||| || || ||||||||||| |
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| T |
23869337 |
atatccaccagcacccgcacataatggccaaaggtgcgtttctgagttgcgatatcaatgatgagaggagtgccaat |
23869413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 17111357 - 17111295
Alignment:
| Q |
379 |
atatccaccagcacctgtgcgtaatggccaaat-gtgcgtttctgagttgcggcgtcaataat |
440 |
Q |
| |
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||||||||||||||| | |||||||| ||||| || ||||| |||||||||||||||||||| |
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| T |
17111357 |
atatccaccagcacccgcgcgtaatgaccaaaaagtacgtttttgagttgcggcgtcaataat |
17111295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 32136215 - 32136282
Alignment:
| Q |
277 |
tgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaaccttccctttccac |
344 |
Q |
| |
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|||||||| ||||||||||||||||||||| | |||||||| |||||| | |||||||||||||| |
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| T |
32136215 |
tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccac |
32136282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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