View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11840_low_20 (Length: 213)

Name: NF11840_low_20
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11840_low_20
NF11840_low_20
[»] chr1 (31 HSPs)
chr1 (3-199)||(9298407-9298603)
chr1 (54-179)||(424304-424430)
chr1 (54-180)||(33487042-33487169)
chr1 (54-180)||(12871603-12871730)
chr1 (54-177)||(3232770-3232894)
chr1 (54-179)||(14265266-14265392)
chr1 (54-179)||(32784090-32784216)
chr1 (4-124)||(32878640-32878761)
chr1 (57-179)||(27534684-27534807)
chr1 (4-179)||(33125818-33125994)
chr1 (54-179)||(7995573-7995699)
chr1 (54-179)||(29205267-29205393)
chr1 (99-177)||(28399336-28399414)
chr1 (54-177)||(28678145-28678269)
chr1 (55-179)||(42490876-42491001)
chr1 (90-179)||(44517167-44517255)
chr1 (87-179)||(4882372-4882463)
chr1 (87-179)||(10627017-10627108)
chr1 (58-180)||(45193638-45193761)
chr1 (54-179)||(20411555-20411681)
chr1 (117-180)||(45425484-45425547)
chr1 (54-174)||(18343596-18343717)
chr1 (54-179)||(42276339-42276463)
chr1 (99-180)||(45750507-45750587)
chr1 (99-179)||(29726609-29726688)
chr1 (99-179)||(37822358-37822437)
chr1 (139-179)||(50107927-50107967)
chr1 (57-179)||(17347584-17347705)
chr1 (145-179)||(15391265-15391299)
chr1 (93-179)||(51418037-51418121)
chr1 (115-172)||(34899025-34899082)
[»] chr7 (37 HSPs)
chr7 (29-179)||(39707248-39707398)
chr7 (4-179)||(21954831-21955007)
chr7 (54-179)||(28664925-28665051)
chr7 (54-179)||(9785299-9785425)
chr7 (56-179)||(45482048-45482172)
chr7 (57-179)||(36579325-36579448)
chr7 (54-179)||(22747521-22747646)
chr7 (54-179)||(45457569-45457695)
chr7 (53-179)||(32740733-32740861)
chr7 (54-180)||(10574363-10574490)
chr7 (54-179)||(5684347-5684473)
chr7 (54-179)||(5709397-5709523)
chr7 (57-179)||(17509217-17509339)
chr7 (57-179)||(17543875-17543997)
chr7 (54-179)||(46026042-46026168)
chr7 (90-180)||(10094461-10094550)
chr7 (57-179)||(11833003-11833127)
chr7 (90-179)||(14657834-14657924)
chr7 (54-179)||(21603445-21603570)
chr7 (55-179)||(42603782-42603907)
chr7 (30-170)||(29352205-29352345)
chr7 (53-180)||(39532987-39533115)
chr7 (54-179)||(27535438-27535566)
chr7 (54-179)||(41287939-41288066)
chr7 (54-179)||(1281150-1281276)
chr7 (54-179)||(17473736-17473862)
chr7 (54-179)||(17579352-17579478)
chr7 (54-180)||(48304405-48304534)
chr7 (54-179)||(3266364-3266496)
chr7 (99-175)||(15674629-15674704)
chr7 (99-177)||(21990691-21990768)
chr7 (92-179)||(24320236-24320322)
chr7 (90-180)||(2622612-2622701)
chr7 (145-179)||(36719565-36719599)
chr7 (99-173)||(42644705-42644778)
chr7 (56-171)||(4028168-4028281)
chr7 (87-179)||(43847087-43847178)
[»] chr4 (40 HSPs)
chr4 (29-179)||(12717130-12717280)
chr4 (29-179)||(22049417-22049568)
chr4 (87-179)||(6881973-6882064)
chr4 (54-180)||(7060306-7060433)
chr4 (50-179)||(20399916-20400046)
chr4 (54-179)||(22757076-22757202)
chr4 (54-179)||(27394812-27394938)
chr4 (54-179)||(29268790-29268916)
chr4 (54-179)||(44757055-44757181)
chr4 (57-179)||(13965545-13965668)
chr4 (54-180)||(24825631-24825758)
chr4 (88-179)||(50801235-50801325)
chr4 (55-179)||(5814330-5814455)
chr4 (29-164)||(3159000-3159136)
chr4 (54-179)||(6911662-6911788)
chr4 (54-179)||(43244394-43244520)
chr4 (54-174)||(478030-478150)
chr4 (54-177)||(24568728-24568852)
chr4 (87-179)||(43493300-43493391)
chr4 (54-179)||(394287-394413)
chr4 (54-179)||(7861219-7861344)
chr4 (54-179)||(30202020-30202146)
chr4 (54-179)||(24100121-24100249)
chr4 (54-180)||(26742475-26742602)
chr4 (54-175)||(8712512-8712634)
chr4 (54-179)||(25658149-25658275)
chr4 (59-179)||(7083829-7083950)
chr4 (54-179)||(42197535-42197662)
chr4 (54-132)||(31521964-31522044)
chr4 (54-175)||(51152107-51152228)
chr4 (54-179)||(11210326-11210452)
chr4 (100-175)||(26674402-26674476)
chr4 (101-163)||(27090755-27090817)
chr4 (145-179)||(36124362-36124396)
chr4 (145-179)||(38944161-38944195)
chr4 (54-180)||(39837576-39837704)
chr4 (54-175)||(626566-626686)
chr4 (117-177)||(3880616-3880676)
chr4 (147-179)||(20887769-20887801)
chr4 (139-179)||(51958420-51958460)
[»] chr2 (36 HSPs)
chr2 (29-177)||(17767566-17767715)
chr2 (54-179)||(27095687-27095813)
chr2 (54-180)||(44942267-44942394)
chr2 (54-179)||(20561145-20561271)
chr2 (54-179)||(22597117-22597243)
chr2 (54-179)||(43474141-43474267)
chr2 (54-179)||(5754270-5754396)
chr2 (54-179)||(33012059-33012185)
chr2 (55-179)||(25067835-25067960)
chr2 (56-171)||(11798537-11798653)
chr2 (54-179)||(12704669-12704795)
chr2 (54-175)||(15919856-15919977)
chr2 (99-177)||(6431402-6431480)
chr2 (89-175)||(13740677-13740762)
chr2 (54-179)||(11937871-11937998)
chr2 (54-179)||(38535318-38535444)
chr2 (117-179)||(11581141-11581203)
chr2 (87-181)||(34416772-34416865)
chr2 (99-177)||(35333534-35333611)
chr2 (87-179)||(4739346-4739437)
chr2 (50-179)||(4604320-4604450)
chr2 (54-179)||(9978682-9978808)
chr2 (54-179)||(32015202-32015332)
chr2 (90-179)||(4426671-4426759)
chr2 (57-180)||(31908828-31908952)
chr2 (90-179)||(32314462-32314550)
chr2 (54-132)||(17268183-17268263)
chr2 (145-180)||(10287018-10287053)
chr2 (145-180)||(41797668-41797703)
chr2 (137-175)||(17792540-17792578)
chr2 (54-179)||(18089409-18089531)
chr2 (146-179)||(12891132-12891165)
chr2 (102-171)||(13879027-13879095)
chr2 (102-171)||(14019152-14019220)
chr2 (54-172)||(9689993-9690112)
chr2 (30-82)||(17055158-17055210)
[»] scaffold0312 (1 HSPs)
scaffold0312 (54-179)||(6119-6245)
[»] chr3 (35 HSPs)
chr3 (31-179)||(106056-106206)
chr3 (54-179)||(36691820-36691946)
chr3 (54-179)||(31270308-31270434)
chr3 (54-179)||(11819065-11819191)
chr3 (54-178)||(13701994-13702119)
chr3 (54-177)||(53155453-53155577)
chr3 (100-179)||(2147756-2147835)
chr3 (54-179)||(3456925-3457051)
chr3 (54-179)||(48652461-48652587)
chr3 (99-179)||(35174733-35174812)
chr3 (90-178)||(54239040-54239127)
chr3 (54-179)||(31462767-31462893)
chr3 (54-179)||(32080775-32080901)
chr3 (54-179)||(34960879-34961005)
chr3 (54-179)||(36624715-36624841)
chr3 (54-179)||(48400881-48401007)
chr3 (140-180)||(24520706-24520746)
chr3 (99-179)||(41868315-41868394)
chr3 (117-177)||(47733900-47733960)
chr3 (99-179)||(49628108-49628187)
chr3 (54-179)||(14585444-14585570)
chr3 (99-180)||(22484994-22485074)
chr3 (54-179)||(38527245-38527371)
chr3 (55-179)||(40013293-40013421)
chr3 (117-179)||(4219226-4219288)
chr3 (145-179)||(33637477-33637511)
chr3 (99-177)||(40883891-40883968)
chr3 (115-180)||(40401521-40401586)
chr3 (87-179)||(55090604-55090695)
chr3 (102-180)||(39610244-39610321)
chr3 (49-91)||(43839601-43839643)
chr3 (54-179)||(4206532-4206658)
chr3 (138-179)||(5327497-5327538)
chr3 (145-178)||(34103739-34103772)
chr3 (54-175)||(30156306-30156428)
[»] chr8 (32 HSPs)
chr8 (29-179)||(2968486-2968640)
chr8 (55-180)||(14600718-14600844)
chr8 (89-179)||(31308167-31308256)
chr8 (87-177)||(32778973-32779063)
chr8 (54-179)||(37612635-37612761)
chr8 (4-118)||(13576257-13576372)
chr8 (54-179)||(30026901-30027027)
chr8 (53-180)||(10338842-10338970)
chr8 (55-179)||(9501572-9501698)
chr8 (26-180)||(7281600-7281757)
chr8 (52-179)||(2234491-2234619)
chr8 (99-180)||(39067709-39067789)
chr8 (3-91)||(25939757-25939844)
chr8 (29-179)||(30039358-30039503)
chr8 (54-179)||(24791189-24791315)
chr8 (54-179)||(31407769-31407895)
chr8 (54-179)||(41361714-41361840)
chr8 (54-179)||(2025230-2025356)
chr8 (57-179)||(3204777-3204899)
chr8 (54-179)||(11161864-11161990)
chr8 (50-179)||(24699808-24699940)
chr8 (54-177)||(1810243-1810366)
chr8 (90-179)||(37128507-37128595)
chr8 (54-179)||(10147928-10148055)
chr8 (54-179)||(12329608-12329735)
chr8 (99-175)||(15288823-15288898)
chr8 (99-175)||(15469192-15469267)
chr8 (93-179)||(4757188-4757273)
chr8 (145-179)||(7579876-7579910)
chr8 (57-180)||(10334159-10334284)
chr8 (137-179)||(13576208-13576250)
chr8 (90-179)||(23971117-23971203)
[»] scaffold0155 (1 HSPs)
scaffold0155 (55-172)||(35065-35185)
[»] chr6 (14 HSPs)
chr6 (54-179)||(6419871-6419997)
chr6 (57-179)||(14783184-14783307)
chr6 (54-179)||(12481383-12481509)
chr6 (54-179)||(15590092-15590218)
chr6 (54-179)||(21507821-21507947)
chr6 (55-179)||(23654233-23654358)
chr6 (54-179)||(4921894-4922021)
chr6 (54-179)||(2304823-2304949)
chr6 (50-179)||(31937433-31937561)
chr6 (54-179)||(8693670-8693799)
chr6 (54-179)||(19402821-19402947)
chr6 (101-163)||(2488169-2488231)
chr6 (147-179)||(6296262-6296294)
chr6 (147-179)||(6303072-6303104)
[»] chr5 (25 HSPs)
chr5 (54-179)||(17331310-17331436)
chr5 (56-179)||(17699537-17699661)
chr5 (24-177)||(25961878-25962033)
chr5 (54-180)||(29097771-29097898)
chr5 (55-179)||(178119-178244)
chr5 (87-179)||(39179841-39179932)
chr5 (55-177)||(12439649-12439771)
chr5 (54-171)||(43493854-43493972)
chr5 (54-179)||(6281026-6281152)
chr5 (54-179)||(28040611-28040737)
chr5 (54-179)||(33164481-33164607)
chr5 (57-179)||(6635234-6635358)
chr5 (54-177)||(32347729-32347854)
chr5 (54-179)||(17096252-17096381)
chr5 (54-180)||(27241046-27241173)
chr5 (100-179)||(3740387-3740465)
chr5 (90-179)||(17687225-17687313)
chr5 (57-180)||(34431045-34431169)
chr5 (54-174)||(39531422-39531540)
chr5 (54-180)||(20483168-20483295)
chr5 (99-179)||(23882129-23882208)
chr5 (100-179)||(12891706-12891784)
chr5 (57-109)||(11824917-11824970)
chr5 (94-179)||(18653806-18653890)
chr5 (50-112)||(981104-981168)
[»] scaffold0294 (1 HSPs)
scaffold0294 (50-180)||(4079-4209)
[»] scaffold1379 (2 HSPs)
scaffold1379 (54-179)||(1099-1225)
scaffold1379 (99-179)||(4-83)
[»] scaffold0536 (1 HSPs)
scaffold0536 (54-179)||(2882-3010)
[»] scaffold0321 (1 HSPs)
scaffold0321 (87-179)||(7137-7228)
[»] scaffold0056 (1 HSPs)
scaffold0056 (56-180)||(74148-74273)
[»] scaffold0432 (1 HSPs)
scaffold0432 (54-172)||(2438-2555)
[»] scaffold1350 (1 HSPs)
scaffold1350 (137-179)||(1640-1682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (58-179)||(404271-404393)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-180)||(202062-202126)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 9298603 - 9298407
Alignment:
Q  3 tcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctccgagttatttt 102  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9298603 tcttctcaaaccttaactgtcggccatttcttcttcttgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctccgagttgtttt 9298504  T
Q  103 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttgtactctgcttgttttgat 199  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  9298503 tccttctatcctagttaaataattgatttccacgtattttaagttttctttcgtttgtttttgtgatttcattgtcttgtactctgcttgttttgat 9298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 424430 - 424304
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  424430 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 424332  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  424331 ttcgtttgtttttgtgatttcgtcgtct 424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 33487169 - 33487042
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||  ||||||| || ||||||| | |||||    
T  33487169 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc-atatattttatgctttct 33487071  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||    
T  33487070 ttcgtttgtttttgtgatttcgtcgtctt 33487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 12871603 - 12871730
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| |||||| || ||||| |||  ||||| ||||||| |  |||||| ||||||||    
T  12871603 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttc-acatattttcagttttct 12871701  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||    
T  12871702 ttcgtttgtttttgtgatttcgtcgtctt 12871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 3232770 - 3232894
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  3232770 gggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgattt-cacatattttctgttttct 3232868  T
Q  152 ttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||| ||||||||||||||||||    
T  3232869 ttcgtttgtttttgtgatttcgtcgt 3232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 14265266 - 14265392
Alignment:
Q  54 gggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  14265266 gggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttctgttttct 14265364  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    | ||| | ||||||||||||||||||||    
T  14265365 tacgtatgtttttgtgatttcgtcgtct 14265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 32784090 - 32784216
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||  ||| ||||| ||||||| |  ||||||  |||||||    
T  32784090 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttc-acatattttctgttttct 32784188  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||| ||||||||||||||||||||    
T  32784189 tttgtttgtttttgtgatttcgtcgtct 32784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 32878640 - 32878761
Alignment:
Q  4 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttt 102  Q
    ||||||||||  ||||||||  || ||||||||| || |||||  |||| |||||||||||||| |||||||| ||||| ||| || |||||||| ||||    
T  32878640 cttctcaaactctaaccgtcacccctttcttcttcttatctatcaaagatgggtgatttagggttaattttgacccaaaatcatccttccgagttgtttt 32878739  T
Q  103 tccttctatccaaattaaataa 124  Q
    ||| ||||||| ||||||||||    
T  32878740 tccctctatcctaattaaataa 32878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 27534684 - 27534807
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||||||||||||||| |||||  ||| |||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  ||||||||||    
T  27534684 tgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttctttc 27534782  T
Q  155 gtttatttttgtgatttcgtcgtct 179  Q
    |||| ||||||||||||||||||||    
T  27534783 gtttgtttttgtgatttcgtcgtct 27534807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 33125994 - 33125818
Alignment:
Q  4 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccgagttatttt 102  Q
    ||||||||||||||  ||||   ||||||||||| |||||||||||| |  |||||||||||||||||||||| ||||| |||| | ||  | || ||||    
T  33125994 cttctcaaaccttagtcgtcactcatttcttctttttgtctattgaaaagaggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttt 33125895  T
Q  103 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |   |||| ||||| |||||||||  || ||| ||| ||||||  ||| ||||||||||||||| ||||    
T  33125894 tccttcttttataattgaataagtgatttccacataattttagtattcttttctttgtttttgtgatttcgttgtct 33125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 7995699 - 7995573
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  7995699 gggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 7995601  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    | | ||| |||||||||| |||||||||    
T  7995600 tccttttttttttgtgatatcgtcgtct 7995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 29205267 - 29205393
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| |  || || ||||||||||||||  |||| ||||| ||||||| || ||||||  |||||||    
T  29205267 gggtgatttagggtcaattttgacccaaaaatcaccccttggaattgtttttccttctatcataattgaataagtgatttc-atatattttctgttttct 29205365  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||| ||||||||||||||||||||    
T  29205366 tttgtttgtttttgtgatttcgtcgtct 29205393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 28399414 - 28399336
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||||| ||||  |||||||||| |||||| ||  |||||| ||||||||||||||| ||||||||||||||||||    
T  28399414 tttttccttatatcataattaaataagtgattttcacatatttttagttttctttcgtttgtttttgtgatttcgtcgt 28399336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 28678269 - 28678145
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || |||||| |||||||  |||| ||||| ||||||| |  |||||||  ||||||    
T  28678269 gggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttc-acatattttatattttct 28678171  T
Q  152 ttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||| ||||||||||||||||||    
T  28678170 ttcgtttgtttttgtgatttcgtcgt 28678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 42490876 - 42491001
Alignment:
Q  55 ggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||| ||||| |  ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgattt-cacatatcttcagttttctt 42490974  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  42490975 tcgtttgtttttgtgatttcgtcgtct 42491001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 44517167 - 44517255
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  | |||||||||||| ||||||||||||||||||||    
T  44517167 tccgaattgtttttccttctatcctaattcaataagtgatttc-acatattttctgctttctttcgtttgtttttgtgatttcgtcgtct 44517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 4882463 - 4882372
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || |||||| || ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  4882463 ccctccgatttgtttttcattatatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 4882372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 10627017 - 10627108
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||| |||||| || ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  10627017 ccctccgagttgtttttctttatatcctaattgaataagtaatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 10627108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 45193761 - 45193638
Alignment:
Q  58 gatttagggtcaattttgaaccaa-agtcaccctccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    ||||||||||||||||| | |||| | |  ||||||||||| ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||    
T  45193761 gatttagggtcaattttaacccaataatacccctccgagttgttttttccttctatcctaattgaataagtgatttc-acatattttccgtttcctttcg 45193663  T
Q  156 tttatttttgtgatttcgtcgtctt 180  Q
    ||| |||||||||||| ||||||||    
T  45193662 tttgtttttgtgattttgtcgtctt 45193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 20411555 - 20411681
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||| || ||| |||||| ||||| ||||||| |  ||||||  |||||||    
T  20411555 gggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttc-acatattttctgttttct 20411653  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||| |||||| ||||||    
T  20411654 ttcgtttgtttttgggatttcatcgtct 20411681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 45425547 - 45425484
Alignment:
Q  117 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||| |||| |||| ||||||| | ||||||||||||  |||||||||||||||||||||    
T  45425547 ttaaataagtgatatccacgtattttcaattttctttcgttagtttttgtgatttcgtcgtctt 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 18343596 - 18343717
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| |||||||||| |||||  |||||| | ||| || |||||||||||| |  |||||||| | ||||||| |  ||||||  |||||||    
T  18343596 gggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgatttc-acatattttctgttttct 18343694  T
Q  152 ttcgtttatttttgtgatttcgt 174  Q
    ||||||| |||||||||||||||    
T  18343695 ttcgtttgtttttgtgatttcgt 18343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 42276339 - 42276463
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||| | ||||||  |||| |||||| ||||| || ||||| ||||||||  |||||||||| ||||||| |  |||||| |||||||||    
T  42276339 gggtgatttagggttatttttgacacaaaatcacccctccgaattgttttttcttctatcataattaaataactgatttc-acatattttcagttttctt 42276437  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||   ||||||||| ||||||||    
T  42276438 tcgttt-gatttgtgattacgtcgtct 42276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 45750507 - 45750587
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||||| ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  45750507 tttttccttttatcctaattgaataagttatttc-acatatttttggttttctttcgtttgtttttgtgatttcgtcgtctt 45750587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 29726688 - 29726609
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| ||||| |||  ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  29726688 tttttccttatatcctaatcgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 29726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 37822437 - 37822358
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||||| ||| ||||||||||||||||||||    
T  37822437 tttttccttctatcctaattgaataagtgatttc-acatattttctattttctttcatttgtttttgtgatttcgtcgtct 37822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 50107967 - 50107927
Alignment:
Q  139 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  50107967 ttttcagttttctttcgtttgtttttgtgatttcgtcgtct 50107927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 17347584 - 17347705
Alignment:
Q  57 tgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    |||||||||||||||||||| | ||| |||||| |||||||| ||||| ||||||||  ||   ||||| |||||| ||  | ||||  ||||||||||     
T  17347584 tgatttagggtcaattttgaccaaaaatcacccatccgagttgttttttcttctatcataaaggaataagtgattt-cacatcttttctgttttctttc- 17347681  T
Q  156 tttatttttgtgatttcgtcgtct 179  Q
    ||| ||||||||||||||||||||    
T  17347682 tttgtttttgtgatttcgtcgtct 17347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 15391299 - 15391265
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  15391299 gttttctttcgtttgtttttgtgatttcgtcgtct 15391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 51418037 - 51418121
Alignment:
Q  93 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||||||||||||| |||| || || ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  51418037 gagttgtttttccttctatcctaattgaa-aagtgatttc-acatattttctgttttctttcgtttgtttttgtaatttcgtcgtct 51418121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 34899025 - 34899082
Alignment:
Q  115 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttc 172  Q
    |||||||||| |||||||| | |||||| ||||||||||||| |  ||||||||||||    
T  34899025 aattaaataagtgatttccgtatattttcagttttctttcgtatgattttgtgatttc 34899082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 39707248 - 39707398
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc-ctccgagttatttttccttctatccaaattaaataattg 127  Q
    |||||||||||||||||   || ||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| |||||||| |||||||||| |     
T  39707248 tttcttcttattgtctacc-aataagggtgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagtt 39707346  T
Q  128 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  39707347 atttccatgtattttcacttttcattcgtttgtttttgtgatttcgtcgtct 39707398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 21955007 - 21954831
Alignment:
Q  4 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttt 102  Q
    ||||||||||| ||  |||||| | ||||||||| ||||| |   |||||||||||||||||||||||||| | ||||| |||| | |||||||| ||||    
T  21955007 cttctcaaaccctagtcgtcggtcctttcttcttcttgtccaccaaagaagggtgatttagggtcaattttaacccaaaatcactcatccgagttgtttt 21954908  T
Q  103 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||||||| |||||||||| |||||||||  |||| | ||||||||||||| | ||||||||||||||||||||    
T  21954907 tcattctatcctaattaaataaatgatttccacatattgtcagttttctttcgtctgtttttgtgatttcgtcgtct 21954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 28665051 - 28664925
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  28665051 gggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 28664953  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  28664952 ttcgtttgtttttgtgattttgtcgtct 28664925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 9785299 - 9785425
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttct 9785397  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||||||||||||||||||||||||    
T  9785398 tttgtttatttttgtgatttcgtcgtct 9785425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 45482048 - 45482172
Alignment:
Q  56 gtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    ||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||| |  || |||    
T  45482048 gtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttatgcgttgttt 45482146  T
Q  154 cgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||| ||||||||||||||    
T  45482147 cgtttgtttttatgatttcgtcgtct 45482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 36579448 - 36579325
Alignment:
Q  57 tgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||||||||||||||| || ||| |||||| ||||| || ||||||||||||||| | || ||||| ||||| |||  ||||||  |||||||||     
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgatt-ccacatattttttgttttctttt 36579350  T
Q  155 gtttatttttgtgatttcgtcgtct 179  Q
    |||| ||||||||||||||||||||    
T  36579349 gtttgtttttgtgatttcgtcgtct 36579325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 22747646 - 22747521
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||| |||| |||| |||||||||| |||| ||||| ||||||  |  ||||||| |||||||    
T  22747646 gggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgatttg-acatattttatgttttct 22747549  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| |||||||||||||||||| |||||    
T  22747548 ttcatttatttttgtgatttcgccgtct 22747521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 45457695 - 45457569
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||||  ||||  |||| ||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttatgttttct 45457597  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||| |||||||| ||||||    
T  45457596 ttcgtttgttttcgtgatttcatcgtct 45457569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 32740733 - 32740861
Alignment:
Q  53 agggtgatttagggtcaattttgaaccaaag--tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 149  Q
    |||||||||||| ||||||||||| | |||   |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||    
T  32740733 agggtgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgatttc-acatattttttgtttt 32740831  T
Q  150 ctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||||||||||||||||||    
T  32740832 ctttcgttgatttttgtgatttcgtcgtct 32740861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 10574363 - 10574490
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||||  ||||  |||||| ||||| || ||||||||| ||||| |||| |||||  |||||  |  ||||||  |||||||    
T  10574363 gggtgatttagggtcaattttgactcaaaaatcacccctccgaattgtttttccttttatcctaattgaataaacgatttt-acatattttctgttttct 10574461  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||    
T  10574462 ttcgtttgtttttgtgatttcgtcgtctt 10574490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 5684347 - 5684473
Alignment:
Q  54 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5684347 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5684445  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||||||||||||| ||||    
T  5684446 ttcgtttgcttttgtgatttcgttgtct 5684473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 5709397 - 5709523
Alignment:
Q  54 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5709397 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5709495  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||||||||||||| ||||    
T  5709496 ttcgtttgcttttgtgatttcgttgtct 5709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 17509339 - 17509217
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17509339 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17509241  T
Q  156 tttatttttgtgatttcgtcgtct 179  Q
    ||| |||||||||||| |||||||    
T  17509240 tttgtttttgtgattttgtcgtct 17509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 17543875 - 17543997
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17543875 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17543973  T
Q  156 tttatttttgtgatttcgtcgtct 179  Q
    ||| |||||||||||| |||||||    
T  17543974 tttgtttttgtgattttgtcgtct 17543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 46026168 - 46026042
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| |||| | ||||| || ||||||||||||||| |||| ||||| | ||||  |  ||||||  |||||||    
T  46026168 gggtgatttagggtcaattttgacccaaaaatcacacatccgaattgtttttccttctatcctaattgaataagttattt-aacatattttttgttttct 46026070  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||| ||||||||||||    
T  46026069 ttcgtttgtttttgttatttcgtcgtct 46026042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 10094461 - 10094550
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10094461 tccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10094550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 11833003 - 11833127
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccc--tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    ||||||| |||||||||||| |||||  ||||||  ||||| || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  || ||||||    
T  11833003 tgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttc-acatattttctgtattcttt 11833101  T
Q  154 cgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||||||||||||||||||    
T  11833102 cgtttgtttttgtgatttcgtcgtct 11833127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 14657924 - 14657834
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| | ||||||||||||||  |||| ||||| | ||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  14657924 tccgagctgtttttccttctatcttaattgaataagttatttcacatatattttcagttttcttttgtttgtttttgtgatttcgtcgtct 14657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 21603445 - 21603570
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    ||||||||||||||||||||||| | |||  ||||| || || || ||||||||||||||| |||| ||||| ||||||| |  |||| |  ||||||||    
T  21603445 gggtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattctctgttttctt 21603543  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    || ||| |||||||||||| |||||||    
T  21603544 tcctttgtttttgtgattttgtcgtct 21603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 42603907 - 42603782
Alignment:
Q  55 ggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    ||||||||| ||||||||||||  | ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||||||  ||||||||    
T  42603907 ggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgattt-cacatattttctgttttctt 42603809  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  42603808 tcgtttgtttttgtgatttcgtcgtct 42603782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 29352205 - 29352345
Alignment:
Q  30 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattga 128  Q
    |||||||| ||||| || ||||| |||||||||| | | ||||||||   | | ||| |||||||||||||||||  || ||||| |||||||||| |||    
T  29352205 ttcttcttcttgtcaatcgaagatgggtgatttatgattaattttgacttagaatcatccctccgagttattttta-ttatatcctaattaaataagtga 29352303  T
Q  129 tttccatgtattttaagttttctttcgtttatttttgtgatt 170  Q
    ||||||  |||| | ||||||||||||||| |||| ||||||    
T  29352304 tttccacatattctcagttttctttcgtttgttttcgtgatt 29352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 39533115 - 39532987
Alignment:
Q  53 agggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    |||||||||||||||||||||||| |||||  ||| | ||| || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||    
T  39533115 agggtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttc 39533017  T
Q  151 tttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||| |||| |||| ||||||||||||||||    
T  39533016 ttttgtttgttttcgtgatttcgtcgtctt 39532987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 27535438 - 27535566
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 150  Q
    ||||||||||||||||||||| | || ||| |||||| ||||| || ||||||||||||| | ||||  |||| ||||||| ||| ||||||  |||||     
T  27535438 gggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttcacatatattttctgtttta 27535537  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| ||| |||||||||||| |||||||    
T  27535538 tttcatttgtttttgtgattttgtcgtct 27535566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 41287939 - 41288066
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaa-agtcaccc-tccgagtta-tttttccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||| | ||||||||||||||| |||| ||||  |||||| ||  ||||||  |||| |    
T  41287939 gggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgattt-cacatattttctgtttcc 41288037  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||| ||||||| |||||||    
T  41288038 tttcgtttgttttagtgattttgtcgtct 41288066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 1281276 - 1281150
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||| ||||||| | |||  |||||| ||||| || |||||| || ||| | |||| ||||| ||||||| |  ||||||  |||||||    
T  1281276 gggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttc-acatattttttgttttct 1281178  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  1281177 ttcgtttgtttttgtgatttcgtcgtct 1281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 17473862 - 17473736
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17473862 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17473764  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| |||||||||||| |||||||    
T  17473763 ttcatttgtttttgtgattttgtcgtct 17473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 17579352 - 17579478
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17579352 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17579450  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| |||||||||||| |||||||    
T  17579451 ttcatttgtttttgtgattttgtcgtct 17579478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 48304534 - 48304405
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| ||  ||||||| |||||| |||| ||||| |||||| |||  |||||  |||||||    
T  48304534 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgattt-catagattttctgttttct 48304436  T
Q  152 ttcgtt--tatttttgtgatttcgtcgtctt 180  Q
    || |||  | |||||||||||||||||||||    
T  48304435 ttagtttgtttttttgtgatttcgtcgtctt 48304405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 3266364 - 3266496
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagttattttt------ccttctatccaaattaaataattgatttccatgtattttaag 145  Q
    |||||||||| |||||||||||| |||| | ||| ||||||||||| |||||      |||||||||| |||| ||||| ||||||| |  ||||||  |    
T  3266364 gggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtgatttc-acatattttctg 3266462  T
Q  146 ttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| |||||||||||||||||||||| |||||||    
T  3266463 tttcctttcgtttatttttgtgattttgtcgtct 3266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 15674704 - 15674629
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  15674704 tttttcctcctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtc 15674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 21990691 - 21990768
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    |||||||| |||||| |||| ||||| ||||||| ||| |||| |  |||||||||||||| ||||||||||||||||||    
T  21990691 tttttcctgctatcctaattgaataagtgatttcacatatattct--gttttctttcgtttgtttttgtgatttcgtcgt 21990768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 24320322 - 24320236
Alignment:
Q  92 cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||| ||||||||||||| ||||||    
T  24320322 cgagttgtttttccttctatcttaatttaataagtgatttc-acatattttttgttttcttttgtttgtttttgtgatttcatcgtct 24320236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 2622612 - 2622701
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||| || ||||||||||||||  |||| ||||| | ||||| |  ||||||  |||||||| ||||| |||||||||||||||||||||    
T  2622612 tccgaattgtttttccttctatcttaattgaataagtaatttc-agatattttctgttttcttgcgtttgtttttgtgatttcgtcgtctt 2622701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 36719599 - 36719565
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  36719599 gttttctttcgtttgtttttgtgatttcgtcgtct 36719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 42644705 - 42644778
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcg 173  Q
    ||||||||||||||| |||| ||||| ||||||| |  |||| |  |||||||||||||| ||||||||||||||    
T  42644705 tttttccttctatcctaattgaataagtgatttc-acatattctctgttttctttcgtttgtttttgtgatttcg 42644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 4028168 - 4028281
Alignment:
Q  56 gtgatttagggtcaattttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattga-tttccatgtattttaagttttctttc 154  Q
    |||||||||||| |||||||| ||||| |||||  |||| ||||||||| |||| |   | |||||||| ||| ||| ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacc--ccgacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttctttc 4028265  T
Q  155 gtttatttttgtgattt 171  Q
      || ||||||||||||    
T  4028266 -attgtttttgtgattt 4028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 43847087 - 43847178
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || ||||||||  ||||| |||| ||||| ||||||| |  ||||||  |||||| ||||||| |||| |||||||||||||||    
T  43847087 ccctccgaattgtttttcctcttatcctaattgaataagtgatttc-acatattttctgttttccttcgtttgttttggtgatttcgtcgtct 43847178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 12717280 - 12717130
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 127  Q
    ||||||||| ||||||||||||  ||| |||||||| ||||||||||| ||||| ||| || ||||| || ||||| ||||||||| |||||||||| ||    
T  12717280 tttcttcttcttgtctattgaaagagg-tgatttagagtcaattttgacccaaaatcatccgtccgacttgttttttcttctatcctaattaaataagtg 12717182  T
Q  128 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||||| ||||||||||||||| ||||||||||||| ||||||    
T  12717181 atttccacatattttcagttttctttcgtttgtttttgtgatttcttcgtct 12717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 22049568 - 22049417
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc-cgagttatttttccttctatccaaattaaataattg 127  Q
    ||||||||| |||||||  ||| |||||||||||||||| |||||||| ||||| |||||||  ||| || ||||||||||||||| |||| ||||| ||    
T  22049568 tttcttcttcttgtctaccgaacaagggtgatttagggttaattttgacccaaaatcaccctttcgaattgtttttccttctatcctaattgaataagtg 22049469  T
Q  128 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||||| ||||||||||| ||||||||| || |||||| ||||    
T  22049468 atttccacatattttcagttttctttcatttatttttatggtttcgttgtct 22049417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 6881973 - 6882064
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||||| ||||||||||||||||||||    
T  6881973 cccttcgagttatttttccttctatcctaattaaataagtgattt-cacatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 6882064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 7060306 - 7060433
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||| |||||||||||||||| | |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  7060306 gggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 7060404  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||    
T  7060405 ttcgtttgtttttgtgatttcgtcgtctt 7060433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 20400046 - 20399916
Alignment:
Q  50 agaagggtgatttagggtcaattttgaaccaaag-tcaccctcc-gagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 147  Q
    ||||||| ||||||||||||||||||| |||||  |||||| || || ||  |||| ||||||||| |||| ||||| ||||||| || ||||||  |||    
T  20400046 agaagggcgatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttc-atatattttctgtt 20399948  T
Q  148 ttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||||||||||||||||||||    
T  20399947 ttctttcgtttatttttgtgatttcgtcgtct 20399916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 22757076 - 22757202
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||||  ||||  ||||| |||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| ||||| |    
T  22757076 gggtgatttagggtcaattttgactcaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgtttttt 22757174  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  22757175 ttcgtttgtttttgtgatttcgtcgtct 22757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 27394812 - 27394938
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  ||||||| |||  |||||||||||||||||| |||| ||||| | ||||  |  ||||||| |||||||    
T  27394812 gggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaatttaaaa-tattttatgttttct 27394910  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  27394911 ttcgtttgtttttgtgatttcgtcgtct 27394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 29268916 - 29268790
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| || ||| |||||| |||||||| ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  29268916 gggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 29268818  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  29268817 ttcgtttgtttttgtgatttcgtcgtct 29268790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 44757181 - 44757055
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| | |||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44757181 gggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 44757083  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||| ||||||||||||||    
T  44757082 ttcgtttgtttttatgatttcgtcgtct 44757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 13965545 - 13965668
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  |||| || ||||||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc-acatattctatgttttctttc 13965643  T
Q  155 gtttatttttgtgatttcgtcgtct 179  Q
    |||| ||||||||||||||||||||    
T  13965644 gtttgtttttgtgatttcgtcgtct 13965668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 24825631 - 24825758
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| |||||||||| | |||  |||| |||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  24825631 gggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctattttct 24825729  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||    
T  24825730 ttcgtttgtttttgtgatttcgtcgtctt 24825758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 50801235 - 50801325
Alignment:
Q  88 cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||||    
T  50801235 cctccgaattatttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgtct 50801325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 5814330 - 5814455
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||||||||| |||||  ||| |||||| |||| |||| |||||||||  |||| ||||| | ||||| |  |||||| |||||||||    
T  5814330 ggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttatttc-acatatttttagttttctt 5814428  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  5814429 tcgtttgtttttgtgatttcgtcgtct 5814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 3159000 - 3159136
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccct-ccgagttatttttccttctatccaaattaaataattg 127  Q
    ||||||||| |||| ||| ||||| || |||||||||||||| ||| | ||||| ||||  | ||||||| ||||||||||||||  |||||||||| ||    
T  3159000 tttcttcttcttgtttatcgaagagggatgatttagggtcaacttttacccaaaatcactattccgagttgtttttccttctatcataattaaataagtg 3159099  T
Q  128 atttccatgtattttaagttttctttcgtttattttt 164  Q
    |||| ||  |||||| || |||||||||||| |||||    
T  3159100 attttcacatattttcagctttctttcgtttgttttt 3159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 6911662 - 6911788
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  ||||| |||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  6911662 gggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 6911760  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||| ||||||    
T  6911761 ttcgtttgtttttgtgatttcttcgtct 6911788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 43244520 - 43244394
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  43244520 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattttcgattttct 43244422  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  43244421 ttcgtttgtttttgtgattttgtcgtct 43244394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 478150 - 478030
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||| |||||||||||| |||||  ||||| ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||| |||    
T  478150 gggtgatttatggtcaattttgacccaaaaatcaccatccgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgtttcctt 478052  T
Q  153 tcgtttatttttgtgatttcgt 174  Q
    ||||||||||||||||||||||    
T  478051 tcgtttatttttgtgatttcgt 478030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 24568852 - 24568728
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||| |||||||| |||||  ||||||| |||| |||||||||||||||||| |||| ||||| ||||||  |  |||| |  ||||| |    
T  24568852 gggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt-tacatattatctgttttat 24568754  T
Q  152 ttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||| ||||||||||||||||||    
T  24568753 ttcgtttgtttttgtgatttcgtcgt 24568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 43493391 - 43493300
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  43493391 ccctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 43493300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 394413 - 394287
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  394413 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgattt-cacatcttttctgctttct 394315  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||| | ||||||||||||||    
T  394314 ttcgtttgtttctatgatttcgtcgtct 394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 7861344 - 7861219
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||  |||||||||| |||||  ||||| ||| || |||||||||||||||||| |||||||||| |||||| ||  ||||||  ||||| |    
T  7861344 gggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgattt-cacatattttctgtttt-t 7861247  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||||||    
T  7861246 ttcatttgtttttgtgatttcgtcgtct 7861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 30202020 - 30202146
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| | | |||| ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30202020 gggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgatttc-acatattttctgttttct 30202118  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  30202119 ttcgtttgtttttgtgatttcgtcgtct 30202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 24100121 - 24100249
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 150  Q
    |||||||||||| ||||||||||||| ||| | |||| ||||| || ||||||||||||||  |||| ||||| ||||||| ||| | || |  ||||||    
T  24100121 gggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttcacatattttctctgttttc 24100220  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| ||||||  ||||||||||||    
T  24100221 tttcgtttgtttttgcaatttcgtcgtct 24100249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 26742602 - 26742475
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  26742602 gggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttc-acatattttctgttttct 26742504  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||| ||||||| ||||||||    
T  26742503 ttcgtttgttttcgtgattttgtcgtctt 26742475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 8712512 - 8712634
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||  | || ||||||||||||||| | || | ||| ||||||| |  ||||||  |||||||    
T  8712512 gggtgatttagggtcaattttgacccaaaaatcacccctcataattgtttttccttctatcctagttgagtaagtgatttc-acatattttttgttttct 8712610  T
Q  152 ttcgtttatttttgtgatttcgtc 175  Q
    ||||||| ||||||||||||||||    
T  8712611 ttcgtttgtttttgtgatttcgtc 8712634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 25658149 - 25658275
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||| ||||||||  ||||  ||||| |||| | || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  |||||||    
T  25658149 gggtgatttagggttaattttgactcaaaaatcacctctccaaattgtttttccttctttcctaatttaataagtgatttc-acatattttctgttttct 25658247  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| | ||||||||||||||||||||    
T  25658248 ttcgtatgtttttgtgatttcgtcgtct 25658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 7083950 - 7083829
Alignment:
Q  59 atttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgt 156  Q
    |||||||||||||||||| |||||  |||||| |  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||   |||||||||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttc-acatattttctattttctttcgt 7083852  T
Q  157 ttatttttgtgatttcgtcgtct 179  Q
    || ||||||||||||||||||||    
T  7083851 ttgtttttgtgatttcgtcgtct 7083829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 42197535 - 42197662
Alignment:
Q  54 gggtgatttagggtcaattttga-accaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaag--ttttc 150  Q
    |||||||||||||| |||||||| |  ||| ||||  ||||| |||||||||||||||||| |||| ||||| ||| || || |||||||  |  ||||     
T  42197535 gggtgatttagggttaattttgacaaaaaaatcactttccgaattatttttccttctatcctaatttaataagtgactt-cacgtattttttgttttttt 42197633  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| ||| ||||||||||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtct 42197662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 31521964 - 31522044
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc 132  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||||    
T  31521964 gggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 51152107 - 51152228
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| ||||||| |||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  | |||||    
T  51152107 gggtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgattt-cacatattttctgctttct 51152205  T
Q  152 ttcgtttatttttgtgatttcgtc 175  Q
    |||||||  |||||||||||||||    
T  51152206 ttcgttt-gttttgtgatttcgtc 51152228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 11210452 - 11210326
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||  | |||  |||||| ||||| ||||||||||| | |||  |||| ||||| ||||||| |  |||||    ||||||    
T  11210452 gggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgatttc-acatatttactcttttct 11210354  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  11210353 ttcgtttgtttttgtgatttcgtcgtct 11210326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 26674402 - 26674476
Alignment:
Q  100 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  26674402 ttttccttctatcataattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtc 26674476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 27090755 - 27090817
Alignment:
Q  101 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 163  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 27090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 36124396 - 36124362
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  36124396 gttttctttcgtttgtttttgtgatttcgtcgtct 36124362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 38944195 - 38944161
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  38944195 gttttctttcgtttgtttttgtgatttcgtcgtct 38944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 39837576 - 39837704
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||| ||||||||||| |||||  |||||| | ||| || ||||||| || ||||| |||| ||||| ||||||| |  ||||||  ||||||    
T  39837576 gggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgatttc-acatattttctgttttc 39837674  T
Q  151 tttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||| ||||| |||||||||| ||||    
T  39837675 tttcgtttgtttttttgatttcgtcatctt 39837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 626686 - 626566
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||  |||||||| |||||  |||||| || || ||||||||| |||||||  |||| ||||| |||||  |||  |||||  |||||||    
T  626686 gggtgatttagggctaattttgacccaaaaatcacccatctgaattatttttc-ttctatcataattgaataagtgattcacat--attttctgttttct 626590  T
Q  152 ttcgtttatttttgtgatttcgtc 175  Q
    ||||||| ||||||||||||||||    
T  626589 ttcgtttgtttttgtgatttcgtc 626566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 3880616 - 3880676
Alignment:
Q  117 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||||  ||||||||| || ||| ||||||||||||||| ||||| |||||| |||||    
T  3880616 ttaaataagcgatttccatatactttgagttttctttcgtttgtttttttgattttgtcgt 3880676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 20887801 - 20887769
Alignment:
Q  147 tttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||| ||||||||||||||||||||    
T  20887801 tttctttcgtttgtttttgtgatttcgtcgtct 20887769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 51958420 - 51958460
Alignment:
Q  139 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| |||||| ||||||||||||||||||| |||||||||    
T  51958420 ttttcagttttatttcgtttatttttgtgatctcgtcgtct 51958460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 17767715 - 17767566
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 127  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||| ||| | |||||| | |||||| ||||||||| ||||| |||||||||| ||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccccttcgagttgtttttccttatatcctaattaaataagtg 17767616  T
Q  128 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    |||||||  |||||| ||||||||||| |||  |||||||||||||||||    
T  17767615 atttccacatattttcagttttctttcatttgattttgtgatttcgtcgt 17767566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 27095687 - 27095813
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  27095687 gggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttttgttttct 27095785  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  27095786 ttcgtttgtttttgtgatttcgtcgtct 27095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 44942267 - 44942394
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44942267 gggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttc-acatattttatgttttct 44942365  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    || |||| |||||||||||||||||||||    
T  44942366 tttgtttgtttttgtgatttcgtcgtctt 44942394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 20561271 - 20561145
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||||||  ||||| || |||| |  ||||||  |||||||    
T  20561271 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttc-acatattttctgttttct 20561173  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  20561172 ttcgtttgtttttgtgatttcgtcgtct 20561145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 22597117 - 22597243
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  ||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  22597117 gggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgattt-cacatattttttgttttct 22597215  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||| |||||| |||||||    
T  22597216 ttcgtttgtttttatgattttgtcgtct 22597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 43474267 - 43474141
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |   |||||  |||||||    
T  43474267 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acaaattttctgttttct 43474169  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  43474168 ttcgtttgtttttgtgatttcgtcgtct 43474141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 5754270 - 5754396
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  ||| |||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  5754270 gggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgatttc-acatattttttgttttct 5754368  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||||||    
T  5754369 ttcatttgtttttgtgatttcgtcgtct 5754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 33012059 - 33012185
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || ||||||||||||| | |||| ||||| ||||||| |  |||||| |||||| |    
T  33012059 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttc-acatattttcagttttgt 33012157  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  33012158 ttcgtttgtttttgtgatttcgtcgtct 33012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 25067835 - 25067960
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||   |||| ||||| ||||||| |  ||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttc-acatattttctgttttctt 25067933  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  25067934 tcgtttctttttgtgatttcgtcgtct 25067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 11798653 - 11798537
Alignment:
Q  56 gtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||| |||||||||||| ||||| |||||| |||  |||  |||||||| ||||| |||||||||| | |||||||  |||||| ||||||||||     
T  11798653 gtgatttatggtcaattttgacccaaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttccacatatttttagttttctttt 11798554  T
Q  155 gtttatttttgtgattt 171  Q
    |||| ||||||||||||    
T  11798553 gtttgtttttgtgattt 11798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 12704669 - 12704795
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12704669 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 12704767  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  12704768 ttcgtttgtttttgtgattttgtcgtct 12704795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 15919856 - 15919977
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||| ||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  |||||| |  |||||    
T  15919856 gggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgattt-cacatattttca-atttct 15919953  T
Q  152 ttcgtttatttttgtgatttcgtc 175  Q
    ||||||| ||||||||||||||||    
T  15919954 ttcgtttgtttttgtgatttcgtc 15919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 6431480 - 6431402
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||||| ||| | |||||||||| |||||||||  |||||| |||||||||| |||| ||||||||||||||||||    
T  6431480 tttttccttatattctaattaaataagtgatttccacatattttcagttttcttttgtttgtttttgtgatttcgtcgt 6431402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 13740762 - 13740677
Alignment:
Q  89 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||| || ||||||  |||||||||||||| ||||||||||||||||    
T  13740762 ctccgaattgtttttccttctatcctaattgaataagtgatttc-atatattttctgttttctttcgtttgtttttgtgatttcgtc 13740677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 11937998 - 11937871
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||||| |||||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  11937998 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgattt-cacatattttttgttttc 11937900  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||| ||||| ||||||    
T  11937899 tttcgttgatttttgtaatttcttcgtct 11937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 38535444 - 38535318
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaa--gtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |   ||||  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38535444 gggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttc-acatattttctgttttct 38535346  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  38535345 ttcgtttgtttttgtgatttcgtcgtct 38535318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 11581203 - 11581141
Alignment:
Q  117 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  11581203 ttaaataagtgattttcatatatttttagttttctttggtttgtttttgtgatttcgtcgtct 11581141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 34416865 - 34416772
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttg 181  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  |||||| |||||| ||| |||| ||||||||||||||||||||||    
T  34416865 ccctccgaattgtttttccttatatcctaattgaataagtgatttc-acatattttcagtttttttttgtttgtttttgtgatttcgtcgtcttg 34416772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 35333534 - 35333611
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||    
T  35333534 tttttcctgctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgt 35333611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 4739346 - 4739437
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||| |||||||||| |||| |||||||||| | |||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||    
T  4739346 ccctccgagttgtttttccttccatcctaattaaataagtaattt-cacatattttctgtttttttccgtttgtttttgtgatttcgtcgtct 4739437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 4604450 - 4604320
Alignment:
Q  50 agaagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 147  Q
    |||||||||||||| |||||||||||| |||||  | || | | |||||| ||||||||||||| | |||| ||||| ||||||| |  ||||||  | |    
T  4604450 agaagggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttc-acatattttctgct 4604352  T
Q  148 ttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || ||||||||||||||||||||    
T  4604351 ttctttcgattgtttttgtgatttcgtcgtct 4604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 9978808 - 9978682
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| | | | || ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9978808 gggtgatttaaggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgatttc-acatattttctgttttct 9978710  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  9978709 ttcgtttgtttttgtgatttcgtcgtct 9978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 32015202 - 32015332
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaat----taaataattgatttccatgtattttaagtt 147  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| ||||||||| ||||  |||    ||||||| |||||| ||  ||||||  |||    
T  32015202 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttatatcataattcaataaataagtgattt-cacatattttctgtt 32015300  T
Q  148 ttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||| ||||||||||||||||||||    
T  32015301 ttcattcatttgtttttgtgatttcgtcgtct 32015332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 4426759 - 4426671
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||| ||| ||||| ||||||||||||||    
T  4426759 tccgatttgtttttccttctatcctaattgaataaatgatttc-acatattttctgttttctttcatttgtttttttgatttcgtcgtct 4426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 31908952 - 31908828
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||| ||||||||||| |||||  ||||||| |||| || ||||| ||| ||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  31908952 tgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgatttc-acatattttctgttttctttc 31908854  T
Q  155 gtttatttttgtgatttcgtcgtctt 180  Q
    |||| ||||| |||||||||||||||    
T  31908853 gtttgtttttctgatttcgtcgtctt 31908828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 32314462 - 32314550
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32314462 tccgaattgttttttcttctatcctaattgaataaatgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32314550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 17268263 - 17268183
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttc 132  Q
    |||||||||| |||||||||||| |||||  ||| |||| |||||| ||||||||||||||| |||| ||||| |||||||    
T  17268263 gggtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttc 17268183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 10287053 - 10287018
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||||||||| |||||||||||||||||||||    
T  10287053 gttttctttcgtttgtttttgtgatttcgtcgtctt 10287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 41797668 - 41797703
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||||||||| |||||||||||||||||||||    
T  41797668 gttttctttcgtttgtttttgtgatttcgtcgtctt 41797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 17792540 - 17792578
Alignment:
Q  137 tattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  17792540 tattttcagttttctttcgtttgtttttgtgatttcgtc 17792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 18089531 - 18089409
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| |||| ||||||| || ||||| ||| ||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  18089531 gggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgattt-cacatattttctgttttct 18089433  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |    ||||||||||||||||||||    
T  18089432 ttag----tttttgtgatttcgtcgtct 18089409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 12891165 - 12891132
Alignment:
Q  146 ttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||| ||||||||||||||||||||    
T  12891165 ttttctttcgtttgtttttgtgatttcgtcgtct 12891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 13879095 - 13879027
Alignment:
Q  102 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 171  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  13879095 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 13879027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 14019220 - 14019152
Alignment:
Q  102 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 171  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  14019220 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 14019152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 9690112 - 9689993
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||| ||||| |||||  |||||| |||||  | ||||||||||||||| |||| ||||| |||| || |  ||||||  ||||| |    
T  9690112 gggtgatttaaggtcaaatttgacccaaaaatcacccctccgaactgtttttccttctatcctaattgaataagtgatctc-acatattttttgtttttt 9690014  T
Q  152 ttcgtttatttttgtgatttc 172  Q
    ||||||| |||||||||||||    
T  9690013 ttcgtttgtttttgtgatttc 9689993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 17055210 - 17055158
Alignment:
Q  30 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaa 82  Q
    |||||||| |||||||| ||| || |||||||||| ||||||||||| |||||    
T  17055210 ttcttcttcttgtctatcgaataaaggtgatttagagtcaattttgatccaaa 17055158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 6119 - 6245
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6119 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 6217  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  6218 ttcgtttgtttttgtgatttcgtcgtct 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 106206 - 106056
Alignment:
Q  31 tcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc--cgagttatttttccttctatccaaattaaataattga 128  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| || ||||| |||||| |  || ||| |||||| ||||| || |||||||||| |||    
T  106206 tcttctttttgtctaccgaagaggggtgatttagggtcaatttcgatccaaaatcacccccatcgggttgtttttcattctaccctaattaaataagtga 106107  T
Q  129 tttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  106106 ttttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 106056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 36691946 - 36691820
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  36691946 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgattt-cacatattttctgtttcct 36691848  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  36691847 ttcgtttgtttttgtgatttcgtcgtct 36691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 31270308 - 31270434
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| |||||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  31270308 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 31270406  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||| ||||||||||||    
T  31270407 ttcgtttgtttttgtaatttcgtcgtct 31270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 11819065 - 11819191
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||| |||||||    
T  11819065 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttatgttttct 11819163  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||||||    
T  11819164 ttcatttgtttttgtgatttcgtcgtct 11819191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 13702119 - 13701994
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaa-gtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  13702119 gggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttc-acatattttctgttttct 13702021  T
Q  152 ttcgtttatttttgtgatttcgtcgtc 178  Q
    ||| ||| |||||||||||||||||||    
T  13702020 ttcatttgtttttgtgatttcgtcgtc 13701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 53155577 - 53155453
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  53155577 gggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttc-acatattttatgttttct 53155479  T
Q  152 ttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||| ||||||| ||||||||||    
T  53155478 ttcgtttgtttttgtaatttcgtcgt 53155453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 2147756 - 2147835
Alignment:
Q  100 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| |||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||| ||||||||||||||||||||    
T  2147756 ttttcgttctatcctaattgaataagtgatttccacatattttcagttttctttcatttgtttttgtgatttcgtcgtct 2147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 3456925 - 3457051
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  ||||| |||||| || ||||||||||||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  3456925 gggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattta-acatattttttgttttct 3457023  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||||||    
T  3457024 ttcctttgtttttgtgatttcgtcgtct 3457051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 48652587 - 48652461
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  48652587 gggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 48652489  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  48652488 ttcgtttgtttttgtgatttcgtcgtct 48652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 35174733 - 35174812
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  35174733 tttttccttctatcctaattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 35174812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 54239127 - 54239040
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtc 178  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||    
T  54239127 tccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtc 54239040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 31462893 - 31462767
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  31462893 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgttttct 31462795  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||| ||||||||||||||||||||    
T  31462794 tttgtttgtttttgtgatttcgtcgtct 31462767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 32080901 - 32080775
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||  ||||||| |  ||||||  |||||||    
T  32080901 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataggtgatttc-acatattttctgttttct 32080803  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  32080802 ttcgtttgtttttgtgattttgtcgtct 32080775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 34961005 - 34960879
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||| |||||||||||||||| |||||  |||||| || || || ||||| ||||||| | |||| ||||| ||||||| |  ||||||| |||||||    
T  34961005 gggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttc-acatattttatgttttct 34960907  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||| ||||||    
T  34960906 ttcgtttgtttttgtgatttcatcgtct 34960879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 36624841 - 36624715
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||| |||||||||  ||| |||||  |||||| ||||| || ||||||||||||||| || ||||||| ||||||| |  ||||||  |||||||    
T  36624841 gggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttccttctatcctaactaaataagtgatttc-acatattttctgttttct 36624743  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||| ||||||||||||||||||||    
T  36624742 tttgtttgtttttgtgatttcgtcgtct 36624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 48400881 - 48401007
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||| | || || || |||||||||||| || | || ||||| ||||||| |  ||||||  |||||||    
T  48400881 gggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttc-acatattttttgttttct 48400979  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  48400980 ttcgtttgtttttgtgatttcgtcgtct 48401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 24520706 - 24520746
Alignment:
Q  140 tttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  24520706 tttaagtattctttcgtttatttttgtgatttcgtcgtctt 24520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 41868394 - 41868315
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  ||||||||||||||  |||||||||||||||||||    
T  41868394 tttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgcttttgtgatttcgtcgtct 41868315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 47733960 - 47733900
Alignment:
Q  117 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    |||||| | ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  47733960 ttaaatgagtgatttccatgtaattttagttttctttcgtttgtttttgtgatttcatcgt 47733900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 49628187 - 49628108
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  49628187 tttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 49628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 14585444 - 14585570
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||| ||||||||||| |||||  |||| ||||  | || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  14585444 gggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 14585542  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||| ||||||||||||| ||||||    
T  14585543 tttgtttgtttttgtgatttcctcgtct 14585570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 22484994 - 22485074
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||||||||||| |||| ||||| ||||||| |||  |||||  |||||||||||||| |||||||||||||||| ||||    
T  22484994 tttttccttctatcctaattgaataagtgatttcgcat--attttctgttttctttcgtttgtttttgtgatttcgtcatctt 22485074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 38527245 - 38527371
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| ||||| ||||||||||  |||| | ||| | || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38527245 gggtgatttaggatcaatcttgaaccaaaaatcacacatccaaattgtttttccttctatcttaattgaataaatgatttc-acatattttctgttttct 38527343  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||| ||||||||||||||    
T  38527344 ttcgtttgtttttatgatttcgtcgtct 38527371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 40013421 - 40013293
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagtttt 149  Q
    |||||||||| ||||||||||| |||||  |||||| | ||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  |||||    
T  40013421 ggtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgtttt 40013323  T
Q  150 ctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| ||||||||||||||||||||    
T  40013322 ctttcgtttgtttttgtgatttcgtcgtct 40013293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 4219226 - 4219288
Alignment:
Q  117 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||| ||  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  4219226 ttaaataagtgattttcacatattttcagttttctttcgtttgtttttatgatttcgtcgtct 4219288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 33637477 - 33637511
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||||||||||||||||||||||||    
T  33637477 gttttctttcgtttatttttgtgatttcgtcgtct 33637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 40883968 - 40883891
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||||| ||||| |||| ||||| |||||||  | ||||||  |||||||||||||| ||||||||||||||||||    
T  40883968 tttttccttttatcctaattgaataagtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtcgt 40883891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 40401586 - 40401521
Alignment:
Q  115 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||||| ||||||||| ||||||| |||  | |||||||||||||| ||||||||| |||||    
T  40401586 aattaaataagtgatttccacgtattttcagtcatatttcgtttatttttatgatttcgtagtctt 40401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 55090695 - 55090604
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || |||||||||||| |  |||||||||| ||||||| |  ||||||  |||||||||| ||| ||||||||||| ||||||||    
T  55090695 ccctccgatttgtttttccttctaccttaattaaataagtgatttc-acatattttctgttttctttcatttgtttttgtgattccgtcgtct 55090604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 39610244 - 39610321
Alignment:
Q  102 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||| |||||||||||| ||||||||    
T  39610244 ttccttctatcctaattgaataagtgatttc-acatattttttgtttcctttcgtttgtttttgtgattttgtcgtctt 39610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 43839643 - 43839601
Alignment:
Q  49 aagaagggtgatttagggtcaattttgaaccaaagtcaccctc 91  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  43839643 aagatgggtgatttagggtcaatttttgaccaaagtcaccctc 43839601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 4206658 - 4206532
Alignment:
Q  54 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 150  Q
    |||||||||| |||||||||||| |  ||| ||| |||||||| || ||||||| | ||||| |||| ||||| || |||| ||| | |||||  |||||    
T  4206658 gggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttcacatatttttta--ttttc 4206561  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| |||| ||||||||||||||||||||    
T  4206560 ttttgtttgtttttgtgatttcgtcgtct 4206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 5327538 - 5327497
Alignment:
Q  138 attttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  5327538 attttcagttttctttcgtttgtttttgtgatttcgttgtct 5327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 34103772 - 34103739
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtc 178  Q
    |||||||||||||| |||||||||||||||||||    
T  34103772 gttttctttcgtttgtttttgtgatttcgtcgtc 34103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 30156428 - 30156306
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| ||  |||||||| ||||| |||| ||||| |||||| ||  ||||||| | |||||    
T  30156428 gggtgatttagggtcaattttgacccaaaaatcacccctccgaatt-gttttccttttatcctaattgaataagtgattt-cacatattttatgatttct 30156331  T
Q  152 ttcg-tttatttttgtgatttcgtc 175  Q
    |||| ||| ||||| ||||||||||    
T  30156330 ttcgttttgtttttatgatttcgtc 30156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 2968486 - 2968640
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc----ctccgagttatttttccttctatccaaattaaataa 124  Q
    |||||| || |||||||||||||| | |||||||| ||||||||||||  |||| |||||    ||||||||| |||||| || ||| | ||||||||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataa 2968585  T
Q  125 ttgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
     |||||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  2968586 gtgattttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 2968640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 14600844 - 14600718
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||||||||| |||||  ||| || |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||  ||||||||    
T  14600844 ggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttc-acatattttctgttttctt 14600746  T
Q  153 tcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||| |||||||||||||||||||||    
T  14600745 tcgtttgtttttgtgatttcgtcgtctt 14600718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 31308167 - 31308256
Alignment:
Q  89 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||    
T  31308167 ctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttctttcgtttgtttttgtgatttcgtcgtct 31308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 32779063 - 32778973
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    |||| |||||| ||||||||| ||||  ||||||||||  ||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  32779063 cccttcgagttgtttttccttatatcataattaaataagagatttccacatattttcagttttctttcgtttatttttgtgatttcgtcgt 32778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 37612635 - 37612761
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 150  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| | || ||||| ||||||| ||| | |||||  |||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttcacatatttttta--ttttc 37612732  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| ||||||||||||||||||||    
T  37612733 tttcgtttgtttttgtgatttcgtcgtct 37612761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 13576372 - 13576257
Alignment:
Q  4 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttt 102  Q
    |||||||||| |||  |||||||| ||||||||| |||||||  ||||| |||||||||||| |||||||||| | ||| ||| ||||||||||| ||||    
T  13576372 cttctcaaactttagtcgtcggccctttcttcttcttgtctaacgaagaggggtgatttaggatcaattttgacctaaaatcatccctccgagttgtttt 13576273  T
Q  103 tccttctatccaaatt 118  Q
    || |||||||| ||||    
T  13576272 tctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 30027027 - 30026901
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||| |||||| |||||  |||||| |||||||| ||||| ||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30027027 gggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttc-acatattttctgttttct 30026929  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  30026928 ttcgtttgtttttgtgatttcgtcgtct 30026901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 10338970 - 10338842
Alignment:
Q  53 agggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||| ||||||||||||  | ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  10338970 agggtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttttgttttc 10338872  T
Q  151 tttcgtttatttttgtgatttcgtcgtctt 180  Q
    |||||||| |||||||||||||||||||||    
T  10338871 tttcgtttgtttttgtgatttcgtcgtctt 10338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 9501572 - 9501698
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||||||||||||| |||||  |||||| || || || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  9501572 ggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 9501670  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  9501671 ttcgtttgtttttgtgatttcgtcgtct 9501698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 7281600 - 7281757
Alignment:
Q  26 ccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataa 124  Q
    |||||||||||| |||||||||||||| |  |||||||||||||||| | | | ||| |||||| ||||| || |||||| |||| | | | || |||||    
T  7281600 ccatttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttcttttctagttgaataa 7281699  T
Q  125 ttgatttccatgtatttta--agttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
     |||||||||| ||||||   | | ||||||||||| ||||||||||||| |||||||    
T  7281700 gtgatttccatatatttttttattgttctttcgtttgtttttgtgatttcatcgtctt 7281757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 2234619 - 2234491
Alignment:
Q  52 aagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 149  Q
    ||||||||| |||||| |||||||| |||||  |||||| | ||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||    
T  2234619 aagggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgtttt 2234521  T
Q  150 ctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| ||||||||||||||||||||    
T  2234520 ctttcgtttgtttttgtgatttcgtcgtct 2234491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 39067789 - 39067709
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  39067789 tttttccttctatcctaatttaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 39067709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 25939844 - 25939757
Alignment:
Q  3 tcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc 91  Q
    ||||||||||| ||| ||||| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||    
T  25939844 tcttctcaaactttagccgtcagtcatttattctttttgtctatcgaagatgg-tgatttagggtcaattttgacccaaaatcaccctc 25939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 30039503 - 30039358
Alignment:
Q  29 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccgagttatttttccttctatccaaattaaataattg 127  Q
    |||||| || ||||||| |||||| | |||||||| |||||||||||| ||||| |||| | ||||| || ||||||||||| | | |||| ||||  ||    
T  30039503 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccaaaatcactcatccgaattgtttttccttcttttctaattgaatatgtg 30039404  T
Q  128 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||      ||||||||||||| ||||||||||||||||||||    
T  30039403 atttccacatat------ttttctttcgtttgtttttgtgatttcgtcgtct 30039358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 24791315 - 24791189
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  ||| || ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  24791315 gggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattta-acatattttctgttttct 24791217  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  24791216 ttcgtttgtttttgtgatttcgtcgtct 24791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 31407895 - 31407769
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  ||| | |||||| || ||||||||||||||  | || ||||| ||||||| |  ||||||  |||||||    
T  31407895 gggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgatttc-acatattttttgttttct 31407797  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||| ||||||||||||||    
T  31407796 ttcgtttgtttttatgatttcgtcgtct 31407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 41361714 - 41361840
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  41361714 gggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttc-acatattttctgttttct 41361812  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  41361813 ttcgtttgtttttgtgatttggtcgtct 41361840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 2025356 - 2025230
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 150  Q
    |||||||||| |||||||||||| | |||  ||||||| || |||| ||||||||| ||| | |||| ||||| ||||||| ||||| || |  |||||     
T  2025356 gggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttcacatgttttct--gtttta 2025259  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||||||||||||||||||    
T  2025258 tttcgtttatttttgtgatttcgtcgtct 2025230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 3204899 - 3204777
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    |||||||| ||||||||||| |||||  | ||||||||| || ||||||| ||||| | |||| ||| | ||||||| |  ||||||  |||||||||||    
T  3204899 tgatttagagtcaattttgacccaaaaattaccctccgaattgtttttccatctattctaatttaatgagtgatttc-acatattttctgttttctttcg 3204801  T
Q  156 tttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||    
T  3204800 tttgtttatgtgatttcgtcgtct 3204777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 11161864 - 11161990
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||| |||||||||||||||||| |||||  |||||| | | |||| |||||| || ||||| |||| ||||| | ||||| |  | |||| ||||||||    
T  11161864 gggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcatttc-acatcttttcagttttct 11161962  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  11161963 ttcgtttgtttttgtgatttcgtcgtct 11161990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 24699808 - 24699940
Alignment:
Q  50 agaagggtgatttagggtcaattttgaacc-aaagtcaccc-tccgag--ttatttttccttctatccaaattaaataattgatttccatgtattttaag 145  Q
    ||||||||||||||||||||||||||| || ||| |||||| ||||||   | ||||| ||| ||||| |||||||||| |||||| ||  ||||||  |    
T  24699808 agaagggtgatttagggtcaattttgacccaaaaatcacccatccgagatgttttttttcttatatcctaattaaataagtgattt-cacatattttctg 24699906  T
Q  146 ttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| |||  |||||| ||||||||||||    
T  24699907 ttttctttcatttgcttttgtaatttcgtcgtct 24699940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 1810366 - 1810243
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||| ||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  1810366 gggtgatttagggtcaattttgacccaaaaatcacccctccga-tttttttttcttctatcctaattcaataagtgattt-cacattttttctgatttct 1810269  T
Q  152 ttcgtttatttttgtgatttcgtcgt 177  Q
    ||||||| ||||||||||||| ||||    
T  1810268 ttcgtttgtttttgtgatttcctcgt 1810243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 37128595 - 37128507
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  37128595 tccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtaatttcgtcgtct 37128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 10147928 - 10148055
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagtt-atttttccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||||  ||||| ||||||||| |||| ||||| |||||| ||  ||||||  |||| |    
T  10147928 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgattt-cacatattttctgtttcc 10148026  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||| ||||  |||||||    
T  10148027 tttcgtttgtttttgagattatgtcgtct 10148055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 12329608 - 12329735
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||| ||||||||||| |||||  ||||| |  ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12329608 gggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 12329706  T
Q  152 ttcgttta-tttttgtgatttcgtcgtct 179  Q
    |||||||  ||||||||||||||||||||    
T  12329707 ttcgttttgtttttgtgatttcgtcgtct 12329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 15288898 - 15288823
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15288898 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15288823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 15469267 - 15469192
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 175  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15469267 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 4757188 - 4757273
Alignment:
Q  93 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||||||||||||  |||||||||| |||||| ||  ||||||  |||||||||| ||| |||||  |||||||||||||    
T  4757188 gagttgtttttccttctatcataattaaataaatgattt-cacatattttctgttttctttcatttctttttaagatttcgtcgtct 4757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 7579910 - 7579876
Alignment:
Q  145 gttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  7579910 gttttctttcgtttgtttttgtgatttcgtcgtct 7579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 10334159 - 10334284
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgta-ttttaagttttcttt 153  Q
    |||||||||||||||||||| |||||  |||| | |  ||||| ||||||||||||||| |||||||||| ||| || ||| || |||| | ||||||||    
T  10334159 tgatttagggtcaattttgatccaaaaatcactcatatgagttgtttttccttctatcctaattaaataagtgagtt-catatatttttcaattttcttt 10334257  T
Q  154 cgtttatttttgtgatttcgtcgtctt 180  Q
     |||| |||| ||||||||||| ||||    
T  10334258 tgtttgttttagtgatttcgtcatctt 10334284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 13576250 - 13576208
Alignment:
Q  137 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| |||||||||||||||||||| ||||||| |||||||    
T  13576250 tattttcagttttctttcgtttattttggtgattttgtcgtct 13576208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 23971203 - 23971117
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| ||||||||||||| | |||| ||||| |||||| ||  ||||||| |||||||||||||  | |||||||||| |||||||    
T  23971203 tccgagttgtttttccttctattctaattgaataagtgattt-cacatattttatgttttctttcgtt--tgtttgtgattttgtcgtct 23971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 35065 - 35185
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttct 151  Q
    |||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||  |||||||    
T  35065 ggtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgttttct 35164  T
Q  152 ttcgtttatttttgtgatttc 172  Q
    ||||||| |||||| ||||||    
T  35165 ttcgtttgtttttgcgatttc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 6419997 - 6419871
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6419997 gggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttc-acatattttttgttttct 6419899  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||| ||| ||||||||||||||||||||    
T  6419898 ttcatttgtttttgtgatttcgtcgtct 6419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 14783307 - 14783184
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||||||||||||||| |||||  |||| ||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  14783307 tgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttc 14783209  T
Q  155 gtttatttttgtgatttcgtcgtct 179  Q
     ||| ||||||||||||||||||||    
T  14783208 atttctttttgtgatttcgtcgtct 14783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 12481509 - 12481383
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  12481509 gggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 12481411  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  12481410 ttcgtttgtttttgtgatttcgtcgtct 12481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 15590218 - 15590092
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  15590218 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttc-acatattttctgttttct 15590120  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||  |||||||||||||||||||    
T  15590119 ttcgtttgcttttgtgatttcgtcgtct 15590092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 21507947 - 21507821
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||| | || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttct 21507849  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||| |||||||    
T  21507848 ttcgtttgtttttgtgattttgtcgtct 21507821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 23654233 - 23654358
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  || | ||||| ||||||| |  ||||||  ||||| ||    
T  23654233 ggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttc-acatattttttgttttatt 23654331  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  23654332 tcgtttgtttttgtgatttcgtcgtct 23654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 4922021 - 4921894
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||||||||||||||| |||||   |||| ||| |||  | ||||||||||||||  |||| ||||| ||||||| |  |||||| ||||||     
T  4922021 gggtgatttagggtcaattttgacccaaaaatacccctcccagtagtttttttccttctatcttaattgaataagtgatttc-acatattttcagtttta 4921923  T
Q  151 tttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||||||||| |||||||    
T  4921922 tttcgtttgtttttgtgattttgtcgtct 4921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 2304949 - 2304823
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| || ||||||| |||||  ||| ||||| ||||| |||| |||||| ||  |||| ||||| ||||||| |  ||||||  |||||||    
T  2304949 gggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgatttc-acatattttctgttttct 2304851  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  2304850 ttcgtttgtttttgtgatttcgtcgtct 2304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 31937561 - 31937433
Alignment:
Q  50 agaagggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 147  Q
    |||||||||||||||||||| |||||| || ||| ||| |||||||| || ||||| ||||||||| |||| ||||| |||||| ||  ||||||  | |    
T  31937561 agaagggtgatttagggtcagttttgacccaaaaatcacccctccgaattgttttt-cttctatcctaattgaataagtgattt-cacatattttctgat 31937464  T
Q  148 ttctttcgtttatttttgtgatttcgtcgtct 179  Q
    || |||||||| ||||||||||||||||||||    
T  31937463 tt-tttcgtttgtttttgtgatttcgtcgtct 31937433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 8693799 - 8693670
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagttt 148  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  ||||    
T  8693799 gggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgttt 8693701  T
Q  149 tctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||| ||||||| |||| |||||||    
T  8693700 tctttcgtttgtttttgtcattttgtcgtct 8693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 19402947 - 19402821
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||| |||||| |||||| |||||  |||||| |  ||||| ||||||||| ||||  |||| || || ||||||| |  ||||||  |||||||    
T  19402947 gggtgatttcgggtcacttttgatccaaaaatcacccctttgagttgtttttccttgtatcataattgaacaagtgatttc-acatattttctgttttct 19402849  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  19402848 ttcgtttgtttttgtgatttcgtcgtct 19402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 2488169 - 2488231
Alignment:
Q  101 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 163  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 2488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 6296294 - 6296262
Alignment:
Q  147 tttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||| ||||||||||||||||||||    
T  6296294 tttctttcgtttgtttttgtgatttcgtcgtct 6296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 6303104 - 6303072
Alignment:
Q  147 tttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||| ||||||||||||||||||||    
T  6303104 tttctttcgtttgtttttgtgatttcgtcgtct 6303072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 17331310 - 17331436
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  17331310 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttct 17331408  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  17331409 ttcgtttgtttttgtgatttcgtcgtct 17331436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 17699537 - 17699661
Alignment:
Q  56 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    ||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  | ||||  |||||||||    
T  17699537 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatcttttctgttttcttt 17699635  T
Q  154 cgtttatttttgtgatttcgtcgtct 179  Q
    ||||| ||||||||||||||||||||    
T  17699636 cgtttgtttttgtgatttcgtcgtct 17699661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 25961878 - 25962033
Alignment:
Q  24 ggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagtt-atttttccttctatccaaattaaa 121  Q
    |||| ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||| | ||| || | ||||||  ||||||||| ||||| |||||||    
T  25961878 ggccctttcttcttcttgtctatcaaaga-gggtgatttagggtcaattttgatccagaatcatccattcgagttggtttttccttatatcctaattaaa 25961976  T
Q  122 taattgatttccatgta-ttttaagttttctttcgtttatttttgtgatttcgtcgt 177  Q
    ||| ||||||| |  || |||| ||||||||||| ||| ||||||||||||||||||    
T  25961977 taagtgatttctacatatttttcagttttctttcctttgtttttgtgatttcgtcgt 25962033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 29097771 - 29097898
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| |||||| |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  29097771 gggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 29097869  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    || |||| |||||||||||||||||||||    
T  29097870 ttagtttgtttttgtgatttcgtcgtctt 29097898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 178244 - 178119
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    ||||||||| ||||||||||||  ||||  ||||| ||||||||| | ||||||| ||||| |||| ||||| ||||||| |  ||||||| ||||||||    
T  178244 ggtgatttaaggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgatttc-acatattttatgttttctt 178146  T
Q  153 tcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||||||||||    
T  178145 tcgtttgtttttgtgatttcgtcgtct 178119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 39179932 - 39179841
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| |||||||||||||||| | |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  39179932 ccctccgaattatttttccttctattctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 39179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 12439771 - 12439649
Alignment:
Q  55 ggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    ||||||||||||  |||||||| | |||  ||||||||||| || |||||| |||||||| | || ||||| ||||||| || ||||||  |||||||||    
T  12439771 ggtgatttagggataattttgacctaaaaatcaccctccgaattgtttttcattctatcctagttgaataagtgatttc-atatattttttgttttcttt 12439673  T
Q  154 cgtttatttttgtgatttcgtcgt 177  Q
    ||||| ||||||||||||||||||    
T  12439672 cgtttgtttttgtgatttcgtcgt 12439649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 43493854 - 43493972
Alignment:
Q  54 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||| | |||| ||||| |||||| ||  ||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgattt-cacatattttttgttttct 43493952  T
Q  152 ttcgtttatttttgtgattt 171  Q
    ||||||| ||||||||||||    
T  43493953 ttcgtttgtttttgtgattt 43493972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 6281026 - 6281152
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| || || |||||||||||||||| | |||| ||||| ||||||  |  ||||||   ||||||    
T  6281026 gggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgatttt-acatattttctattttct 6281124  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  6281125 ttcgtttgtttttgtgatttcgtcgtct 6281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 28040611 - 28040737
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| ||| | |  ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  28040611 gggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 28040709  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  28040710 ttcgtttgtttttgtgatttcgtcgtct 28040737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 33164607 - 33164481
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| ||||||||||||  ||||  |||| ||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  33164607 gggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 33164509  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  33164508 ttcgtttgtttttgtgatttcgtcgtct 33164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 6635234 - 6635358
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccctcc--gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    |||||||||| ||||||||| |||||  ||||||||   ||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||    
T  6635234 tgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgatttc-acatattttctgttttcttt 6635332  T
Q  154 cgtttatttttgtgatttcgtcgtct 179  Q
     |||| ||||||||||||||||||||    
T  6635333 agtttgtttttgtgatttcgtcgtct 6635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 32347854 - 32347729
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttc 150  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||     
T  32347854 gggtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttc-acatattttctgtttta 32347756  T
Q  151 tttcgtttatttttgtgatttcgtcgt 177  Q
    |||||||| ||||||||||||||||||    
T  32347755 tttcgtttgtttttgtgatttcgtcgt 32347729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 17096381 - 17096252
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaa-agtca-ccctccga---gttatttttccttctatccaaattaaataattgatttccatgtattttaagttt 148  Q
    ||||||||||||||||||||||| |||| | ||| |||||| |   ||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  ||||    
T  17096381 gggtgatttagggtcaattttgacccaataatcacccctcccagttgttttttttccttctatcctaattgaataagtgattt-cacatattttctgttt 17096283  T
Q  149 tctttcgtttatttttgtgatttcgtcgtct 179  Q
     ||||||||| |||||||||||| |||||||    
T  17096282 cctttcgtttgtttttgtgattttgtcgtct 17096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 27241046 - 27241173
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| | |||||||||| |||||  |||||| || || || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  27241046 gggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 27241144  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||| ||||||| |||||||||||||    
T  27241145 ttcgtttgtttttgtaatttcgtcgtctt 27241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 3740387 - 3740465
Alignment:
Q  100 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||| ||||||||||||||||    
T  3740387 ttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttgtgtgatttcgtcgtct 3740465  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 17687225 - 17687313
Alignment:
Q  90 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| ||||||||||||||  |||| ||||| | ||||| |  |||||| |||||||||| |||| ||||||||||||||| ||||    
T  17687225 tccgagttgtttttccttctatcttaattgaataagttatttc-acatattttcagttttcttttgtttgtttttgtgatttcgttgtct 17687313  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 34431045 - 34431169
Alignment:
Q  57 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 154  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||| |||||||   |||| ||||| ||||||| |  ||||||  ||||||||||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttc-acatattttctgttttctttc 34431143  T
Q  155 gtttatttttgtgatttcgtcgtctt 180  Q
    ||||  ||||||||||||||||||||    
T  34431144 gtttgattttgtgatttcgtcgtctt 34431169  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 39531540 - 39531422
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||  |||||||||||||  |||| ||||| |||||| ||  || |||  ||||||||    
T  39531540 gggtgatttaaggtcaattttgacccaaaatcatccctccgagtt-gttttccttctatcgtaattgaataagtgattt-cacata-tttctgttttctt 39531444  T
Q  153 tcgtttatttttgtgatttcgt 174  Q
    | |||| |||||||||||||||    
T  39531443 ttgtttgtttttgtgatttcgt 39531422  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 20483168 - 20483295
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaatta-aataattgatttccatgtattttaagttttct 151  Q
    |||||||||||| |||||||||| |||||  ||||||||| | || ||||||||| ||| | ||||  ||||| ||||||| |  ||||||  ||||| |    
T  20483168 gggtgatttaggatcaattttgacccaaaaatcaccctccaaattgtttttccttttattctaatttgaataagtgatttc-acatattttctgttttgt 20483266  T
Q  152 ttcgtttatttttgtgatttcgtcgtctt 180  Q
    || |||| |||||||||||||||||||||    
T  20483267 tttgtttgtttttgtgatttcgtcgtctt 20483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 23882208 - 23882129
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||| ||||||||||||| ||||| ||||||  |  |||||||  |||||| |||||| ||||||||||||||||||||    
T  23882208 tttttctttctatccaaattgaataagtgatttg-acatattttatattttctatcgtttgtttttgtgatttcgtcgtct 23882129  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 12891706 - 12891784
Alignment:
Q  100 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||| ||||    
T  12891706 ttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgttgtct 12891784  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 11824970 - 11824917
Alignment:
Q  57 tgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttct 109  Q
    ||||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  11824970 tgatttaaggtcaattttgatccaaaatcatccctccgaattatttttccttct 11824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 18653806 - 18653890
Alignment:
Q  94 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||| ||||| ||| ||||| |||| ||||| |||||||  | ||||||  | |||||||||||| ||||||||||||||||||||    
T  18653806 agttgttttttcttatatcctaattgaataagtgatttcg-tatattttctgatttctttcgtttgtttttgtgatttcgtcgtct 18653890  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 981168 - 981104
Alignment:
Q  50 agaagggtgatttagggtcaattttgaaccaa-agtc-accctccgagttatttttccttctatc 112  Q
    |||||||||||||||| |||||||||| |||| | ||  ||||||||||| ||||||||||||||    
T  981168 agaagggtgatttaggatcaattttgacccaataatcgcccctccgagttgtttttccttctatc 981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 4209 - 4079
Alignment:
Q  50 agaagggtgatttagggtcaattttga-accaaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 147  Q
    |||||| |||||||||||||||||||| || ||| |||| |||  ||||| | || |||||||||| |||||||||| ||||||| |  ||||||| |||    
T  4209 agaaggctgatttagggtcaattttgacacaaaaatcactcctttgagttgtctt-ccttctatcctaattaaataagtgatttc-acatattttatgtt 4112  T
Q  148 ttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||||||| |||||||||||||||||||||    
T  4111 ttctttcgtttgtttttgtgatttcgtcgtctt 4079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 1225 - 1099
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 151  Q
    |||||||||| |||||||||||| |||||  |||||| | ||| || |||||||||||| || |||| ||||| ||||||| |  |||||| ||||||||    
T  1225 gggtgatttaaggtcaattttgacccaaaaatcacccctgcgaattgtttttccttctaccctaattgaataagtgatttc-acatattttcagttttct 1127  T
Q  152 ttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| ||||||||||||||||||||    
T  1126 ttcgtttgtttttgtgatttcgtcgtct 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 4 - 83
Alignment:
Q  99 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  4 tttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 2882 - 3010
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 149  Q
    ||||||||||||||||||||||| |||| | ||| ||||||||||  | ||||||||||||||| |||| ||||| |||||| ||  ||||||  ||||     
T  2882 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgattt-cacatattttctgtttc 2980  T
Q  150 ctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||||| |||||||||||| |||||||    
T  2981 ctttcgtttgtttttgtgattttgtcgtct 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 7228 - 7137
Alignment:
Q  87 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  7228 ccctccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 7137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 74148 - 74273
Alignment:
Q  56 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 153  Q
    |||||||||  |||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||    
T  74148 gtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttcttt 74246  T
Q  154 cgtttatttttgtgatttcgtcgtctt 180  Q
    ||||| ||||||||||||  |||||||    
T  74247 cgtttgtttttgtgattttttcgtctt 74273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 2555 - 2438
Alignment:
Q  54 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 152  Q
    |||||||||||||||| |||||| |||||  |||||||| ||||| ||||||||||||||  |||  ||||| |||||| ||  ||||||  ||||||||    
T  2555 gggtgatttagggtcatttttgacccaaaaatcaccctctgagttgtttttccttctatcataatcgaataagtgattt-cacatattttctgttttctt 2457  T
Q  153 tcgtttatttttgtgatttc 172  Q
    ||||||  ||||||||||||    
T  2456 tcgttt-gttttgtgatttc 2438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 1640 - 1682
Alignment:
Q  137 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 179  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  1640 tattttatgttttctttcgtttgtttttgtgatttcgtcgtct 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 404393 - 404271
Alignment:
Q  58 gatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 155  Q
    |||||| |||||||||||| |||||  |||||| ||||| |  |||||| | |||||| |||| ||||| ||||||| |  ||||||  |||||||| ||    
T  404393 gatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttc-acatattttctgttttcttccg 404295  T
Q  156 tttatttttgtgatttcgtcgtct 179  Q
    ||| ||||||||||||||||||||    
T  404294 tttgtttttgtgatttcgtcgtct 404271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 202126 - 202062
Alignment:
Q  116 attaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 180  Q
    ||||||||| |||||||||  |||||| ||| |||||||||||  | ||||||||||||| ||||    
T  202126 attaaataagtgatttccacatattttcagtattctttcgttttgtattgtgatttcgtcatctt 202062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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