View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11840_low_4 (Length: 629)
Name: NF11840_low_4
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_4 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 193 - 590
Target Start/End: Complemental strand, 33951205 - 33950801
Alignment:
| Q |
193 |
tgattctgtctaacacaccgctaattcaaacatgctttagaga-gccaaagaggatttatgacttacccttaactcgttcatcccaacaaagctttgtag |
291 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| | ||| | | |||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
33951205 |
tgattctgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtag |
33951106 |
T |
|
| Q |
292 |
ccaaagtggttttccccaatcctcctaaaccagttaagacaagtgtggagctaccacccctcagaagctccattttcaacatgctaaatggtatatccaa |
391 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
33951105 |
ccagagtggttttccccaatcctcctaaaccagtcaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatggtatatccaa |
33951006 |
T |
|
| Q |
392 |
cccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaagttgtccatcttcattgaattcatggttgagaagctcaagaatttctctg |
491 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33951005 |
cccaacagtgaatttttgattttcaggaacattgaaaggacgcttgaaaagttgtccatcttcattgaattcatggttgagaagctcaagaatttctctg |
33950906 |
T |
|
| Q |
492 |
gccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaa------cgtaggaatcattctcaaaagaagatttgcatgcac |
585 |
Q |
| |
|
| ||| ||||| |||||||| ||||| |||||| |||||||||||||||| ||||||| | ||||||||||||||| ||||| || | ||||||| |
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| T |
33950905 |
gtcttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccataggaatcattctcagaagaacatgtacatgcac |
33950806 |
T |
|
| Q |
586 |
tttct |
590 |
Q |
| |
|
||||| |
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|
| T |
33950805 |
tttct |
33950801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 193 - 593
Target Start/End: Complemental strand, 33990689 - 33990274
Alignment:
| Q |
193 |
tgattctgtctaacacaccgctaattcaaacatgctttagagagccaaagaggatttatgacttacccttaactcgttcatcccaacaaagctttgtagc |
292 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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|
| T |
33990689 |
tgattatgtctaacacaccgctaatccaaacatgcatgagagagccaaagaggatttatgacttaccattaacttcttgatcccaacaaagctttgtagc |
33990590 |
T |
|
| Q |
293 |
caaagtggttttccccaatcctcctaaaccagttaagacaagtgtggagctaccacccctcagaagctccattttcaacatgctaaatggtatatccaac |
392 |
Q |
| |
|
||||||||||||||| ||||||||||| || || || ||||| |||||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |
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|
| T |
33990589 |
caaagtggttttccctaatcctcctaagcccgtcaacacaagggtggagctaccatcccttataagctccattttcaacttgctaaatggtatatccaac |
33990490 |
T |
|
| Q |
393 |
ccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaagttgtccatcttcattgaa---------------ttcatggttgagaagct |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || || | |||||||||| ||||| ||||||||||| |
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|
| T |
33990489 |
ccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaggtggtttagcttcattgaatttgtgttcaaaagtttcatagttgagaagct |
33990390 |
T |
|
| Q |
478 |
caagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatcattctcaaaagaagattt |
577 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |
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|
| T |
33990389 |
caagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctcagaagaacattt |
33990290 |
T |
|
| Q |
578 |
gcatgcactttcttct |
593 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33990289 |
gcatgcactttcttct |
33990274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 193 - 415
Target Start/End: Complemental strand, 33973800 - 33973577
Alignment:
| Q |
193 |
tgattctgtctaacacaccgctaattcaaacatgctttagaga-gccaaagaggatttatgacttacccttaactcgttcatcccaacaaagctttgtag |
291 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| | ||| | | |||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
33973800 |
tgattctgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtag |
33973701 |
T |
|
| Q |
292 |
ccaaagtggttttccccaatcctcctaaaccagttaagacaagtgtggagctaccacccctcagaagctccattttcaacatgctaaatggtatatccaa |
391 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
33973700 |
ccagagtggttttccccaatcctcctaaaccagtcaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatggtatatccaa |
33973601 |
T |
|
| Q |
392 |
cccaacagtgaattttggattttc |
415 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
33973600 |
cccaacagtgaattttggattttc |
33973577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 465 - 617
Target Start/End: Complemental strand, 33973575 - 33973423
Alignment:
| Q |
465 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatcattct |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33973575 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtaggaatcattct |
33973476 |
T |
|
| Q |
565 |
caaaagaagatttgcatgcactttcttctatcaaactatttatttcttctctg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33973475 |
caaaagaagatttgcatgcactttcttctatcaaactatttatttcttctctg |
33973423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 465 - 590
Target Start/End: Complemental strand, 33959573 - 33959448
Alignment:
| Q |
465 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatcattct |
564 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33959573 |
tggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattct |
33959474 |
T |
|
| Q |
565 |
caaaagaagatttgcatgcactttct |
590 |
Q |
| |
|
|| ||||| ||||||||||||||||| |
|
|
| T |
33959473 |
cagaagaacatttgcatgcactttct |
33959448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 33974214 - 33974106
Alignment:
| Q |
18 |
caactaaatgaacagttaacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcagttaatataaga |
117 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||| |||| ||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| |
|
|
| T |
33974214 |
caactaaatgaacacttgacagaaaagaaagttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagaggatagaaga |
33974115 |
T |
|
| Q |
118 |
tgcctacaa |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
33974114 |
tgcctacaa |
33974106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 33991133 - 33991025
Alignment:
| Q |
18 |
caactaaatgaacagttaacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcagttaatataaga |
117 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||| ||||||||| |||||||||||||||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
33991133 |
caactaaatgaacacttgacagaaaagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagagaatagaaga |
33991034 |
T |
|
| Q |
118 |
tgcctacaa |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
33991033 |
tgcctacaa |
33991025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 248 - 441
Target Start/End: Complemental strand, 33911914 - 33911721
Alignment:
| Q |
248 |
ttatgacttacccttaactcgttcatcccaacaaagctttgtagccaaagtggttttccccaatcctcctaaaccagttaagacaagtgtggagctacca |
347 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||| || | ||| || || |||||| |
|
|
| T |
33911914 |
ttatgacttacccttaacttgttgatccaaacacagctttgtagccaaagtggtttttcccattccacctaaaccagtcaacaaaagagtagatctacca |
33911815 |
T |
|
| Q |
348 |
cccctcagaagctccattttcaacatgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaa |
441 |
Q |
| |
|
|||| ||||| ||||| ||| | | | ||| | |||||| |||||||| |||| ||||||||||||||| | ||||||| ||| |||| |
|
|
| T |
33911814 |
tccctgagaagttccatcttcggcttaatcaattgcgaatccaaaccaacagtaaattcaggattttcaggaacaccaaaaggacccttaaaaa |
33911721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 33951613 - 33951525
Alignment:
| Q |
18 |
caactaaatgaacagttaacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcag |
106 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||| ||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
33951613 |
caactaaatgaacacttgacagaaaagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcag |
33951525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 33939575 - 33939519
Alignment:
| Q |
253 |
acttacccttaactcgttcatcccaacaaagctttgtagccaaagtggttttcccca |
309 |
Q |
| |
|
|||||||||||||| | |||||| |||| ||||||||||||| ||| ||||| |||| |
|
|
| T |
33939575 |
acttacccttaacttgatcatccaaacacagctttgtagccagagttgtttttccca |
33939519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 8278802 - 8278920
Alignment:
| Q |
201 |
tctaacacaccgctaattcaaacatgctttagagagccaaagaggatttatgacttacccttaactcgttcatcccaacaaagctttgtagccaaagtgg |
300 |
Q |
| |
|
|||||||||| |||||| ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8278802 |
tctaacacactgctaatccaaacatgcatgagagagccaaagaggatttatcacttacccttaacttgttcatcccaacaaagctttgtagccaaagtgg |
8278901 |
T |
|
| Q |
301 |
ttttccccaatcctcctaa |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8278902 |
ttttccccaatcctcctaa |
8278920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 253 - 560
Target Start/End: Complemental strand, 10660 - 10335
Alignment:
| Q |
253 |
acttacccttaactcgttcatcccaacaaagctttgtagccaaagtggttttccccaatcctcctaaaccagttaagacaagtgtggagctaccacccct |
352 |
Q |
| |
|
|||||||||| | | |||||||||||||||| || ||||||| ||||||||| ||||| ||||| |||||||| || ||||| || ||||| ||| | || |
|
|
| T |
10660 |
acttacccttgatttgttcatcccaacaaagattggtagccagagtggtttttcccaaccctcccaaaccagtcaacacaagggttgagcttccatctct |
10561 |
T |
|
| Q |
353 |
cagaagctccattttcaacatgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaa---gttgtcca |
449 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| | ||||||| |||||| ||||||||| |||||| | ||||||| |||||| | || ||||| |
|
|
| T |
10560 |
caatagctccattttcaacttgctaaatggtatatcaatcccaacaatgaattctggattttctggaacaccaaaaggacccttgaatattggtggtcca |
10461 |
T |
|
| Q |
450 |
tcttcattgaa---------------ttcatggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagatt |
534 |
Q |
| |
|
| |||||| || ||| | ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
10460 |
ttttcattaaatttctgttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagatt |
10361 |
T |
|
| Q |
535 |
ggttctcatcaacaacgtaggaatca |
560 |
Q |
| |
|
|||| |||||||| || ||||||||| |
|
|
| T |
10360 |
ggttatcatcaacgacataggaatca |
10335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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