View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11840_low_6 (Length: 483)
Name: NF11840_low_6
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_6 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 80 - 477
Target Start/End: Complemental strand, 4266137 - 4265740
Alignment:
| Q |
80 |
attgttacctttgagtggtagtagaccttttcgaatcagagtagaaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggatt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266137 |
attgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggatt |
4266038 |
T |
|
| Q |
180 |
gggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgat |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266037 |
gggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgat |
4265938 |
T |
|
| Q |
280 |
gaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccat |
379 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4265937 |
gaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccat |
4265838 |
T |
|
| Q |
380 |
tggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
4265837 |
tggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtatt |
4265740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 162 - 477
Target Start/End: Original strand, 4471047 - 4471359
Alignment:
| Q |
162 |
ggagaaaagaaaaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaac |
261 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||| | |||||||| ||| || |||| || |
|
|
| T |
4471047 |
ggagaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagac |
4471146 |
T |
|
| Q |
262 |
catcattggcagattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagc |
361 |
Q |
| |
|
|| || ||||||| || ||| ||||||||||||||| |||||||||||||||| ||||||||||||| | | || | || |||||||||| || |
|
|
| T |
4471147 |
cagcagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataag |
4471246 |
T |
|
| Q |
362 |
atcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaa |
461 |
Q |
| |
|
||||||| | |||||||| ||| | ||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
4471247 |
atcacca---ctttccattgcagtaaaaccatttggaatggtctcaaagttaaagtcagtgaaaccatcaagagaatcaggacctcttgaattgagcaag |
4471343 |
T |
|
| Q |
462 |
cgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4471344 |
gctttgtgattgtatt |
4471359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 177 - 477
Target Start/End: Original strand, 4575600 - 4575900
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt |
276 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||| | ||| || |||| |||| || ||||||| | |
|
|
| T |
4575600 |
attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagt |
4575699 |
T |
|
| Q |
277 |
gatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttc |
376 |
Q |
| |
|
||||| ||| ||||||||||| ||| || | |||||||| |||||||||| |||||| || || ||||||| | |||||||||| || || |
|
|
| T |
4575700 |
cttgaagtttagcaagaagttcatcaaagaagtggcgaaagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccattaccatc |
4575799 |
T |
|
| Q |
377 |
cattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtat |
476 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
4575800 |
ctttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtat |
4575899 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
4575900 |
t |
4575900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 168 - 477
Target Start/End: Original strand, 4623443 - 4623752
Alignment:
| Q |
168 |
aagaaaaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcat |
267 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| | ||| ||||| | ||||||||||| |||||| |||||||||| |||||||| || |||| || |
|
|
| T |
4623443 |
aagaaaacaattgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcag |
4623542 |
T |
|
| Q |
268 |
tggcagattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcacc |
367 |
Q |
| |
|
||||||| | |||||| | | |||||||||| ||||| ||| ||| ||| || | ||||| | ||||| | |||||||||| || ||||||| |
|
|
| T |
4623543 |
tggcagagtcatgaagttttgcaagaagttcacaaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcacc |
4623642 |
T |
|
| Q |
368 |
attgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttg |
467 |
Q |
| |
|
|| ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||| | || ||| |||||||||||||||| || ||| |
|
|
| T |
4623643 |
atcaccttccattggtgttaaaccatctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttg |
4623742 |
T |
|
| Q |
468 |
tgattgtatt |
477 |
Q |
| |
|
|||||||||| |
|
|
| T |
4623743 |
tgattgtatt |
4623752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 477
Target Start/End: Original strand, 4627198 - 4627595
Alignment:
| Q |
80 |
attgttacctttgagtggtagtagaccttttcgaatcagagtagaaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggatt |
179 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||| ||| ||| || ||| || ||||||| | | ||||| | | | |||||||| | ||| |
|
|
| T |
4627198 |
attgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaatt |
4627297 |
T |
|
| Q |
180 |
gggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgat |
279 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| | ||| |||||| ||||| |||||||||| ||||| || || |||| || |||| || | || |
|
|
| T |
4627298 |
gggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcat |
4627397 |
T |
|
| Q |
280 |
gaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccat |
379 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||||||||||| | | |||||||| ||||| ||||||||||||| |||| |||| ||||| | |
|
|
| T |
4627398 |
gaagtttagcaagaagttcaccaaagggctgaaggaagttctttcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctag |
4627497 |
T |
|
| Q |
380 |
tggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||| |||| |||||||||||||||||||||| |||| ||| ||||||||||| | ||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4627498 |
tggtgttaaaccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtatt |
4627595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 477
Target Start/End: Original strand, 4561809 - 4562106
Alignment:
| Q |
179 |
tgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattga |
278 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||||| |||| ||||| |||||||| | ||| || |||| |||| || ||||||| | |
|
|
| T |
4561809 |
tgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtct |
4561908 |
T |
|
| Q |
279 |
tgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttcca |
378 |
Q |
| |
|
||||| ||| ||||||||||| ||| || | |||||||| |||||||||| |||||| || || ||||||| || |||||||| || ||| |
|
|
| T |
4561909 |
tgaagtttagcaagaagttcatcaaagaagtggtgaaagttcgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcct |
4562008 |
T |
|
| Q |
379 |
ttggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||| | |||||||||| |||||||| ||||||||||||| |
|
|
| T |
4562009 |
ttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtatt |
4562106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 177 - 477
Target Start/End: Original strand, 4482010 - 4482310
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||||| |||| ||||| |||||||| | ||| || |||| |||| || ||||||||| |
|
|
| T |
4482010 |
attgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataataccagcagtggcagatt |
4482109 |
T |
|
| Q |
277 |
gatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttc |
376 |
Q |
| |
|
|||||| ||| |||| ||||| ||| || | |||||||||||||||||||| ||||| | ||| ||||||| | | ||| ||| ||||| |
|
|
| T |
4482110 |
catgaagtttagccagaaattcatcaaagaagtggcgaaagttcgtcatgattgattgagtaagagagaataagtcttgacttacttcatcatcaccttc |
4482209 |
T |
|
| Q |
377 |
cattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtat |
476 |
Q |
| |
|
|||||||||| |||||||||||| || |||||| |||| ||| |||||||||||| | || ||| | |||||||| |||||||| |||||||||||| |
|
|
| T |
4482210 |
aattggagttaaaccatctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtgattgtat |
4482309 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
4482310 |
t |
4482310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 477
Target Start/End: Original strand, 4462343 - 4462652
Alignment:
| Q |
165 |
gaaaagaaaaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccat |
264 |
Q |
| |
|
||||||| || ||||||||||||| ||| |||||| ||||| | ||||| ||||||||||||| ||||| | |||||||| || || |||| | | |
|
|
| T |
4462343 |
gaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagatcgg |
4462442 |
T |
|
| Q |
265 |
cattggcagattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatc |
364 |
Q |
| |
|
|| ||||||| || ||| || |||||||||||| |||||||||| ||||||| ||||||||||||| | || || || ||||||| | |||| |
|
|
| T |
4462443 |
cagtggcagaggcatcaagtcttgtaagaagttcactaaagggttgaatgaagttcatcatgattgattgaaaaaataagtgtacgtcttgaaaaacatc |
4462542 |
T |
|
| Q |
365 |
accattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgc |
464 |
Q |
| |
|
|||| | |||||||| || | ||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||| | |
|
|
| T |
4462543 |
accagt---ttccattgttgtaaaaccatttggaatggtctcaaagttaaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaa |
4462639 |
T |
|
| Q |
465 |
ttgtgattgtatt |
477 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4462640 |
ttgtgattgtatt |
4462652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 477
Target Start/End: Complemental strand, 4259256 - 4258859
Alignment:
| Q |
80 |
attgttacctttgagtggtagtagaccttttcgaatcagagtagaaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggatt |
179 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||| ||| ||| || ||| | ||||||| ||| |||| | |||||| ||||||| ||| |
|
|
| T |
4259256 |
attgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaatt |
4259157 |
T |
|
| Q |
180 |
gggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgat |
279 |
Q |
| |
|
||||||||||| ||||||||||| | ||| |||| | ||||||||||| ||||| |||||||||| ||||||| || |||| | |||| || | | |
|
|
| T |
4259156 |
gggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtctt |
4259057 |
T |
|
| Q |
280 |
gaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccat |
379 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||||||||||| | | || ||||| ||| | | || |||||||||| |||| |||| ||||||| |
|
|
| T |
4259056 |
gaagtttagcaagaagttcaccaaagggctgaaggaagttctttcttatagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccac |
4258957 |
T |
|
| Q |
380 |
tggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||| ||||||||| | || ||||||||| |||| ||| |||||||||||| | ||| | ||||||||||||||||||| |||||||| |||| |
|
|
| T |
4258956 |
tggagtcagaccatcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtgattatatt |
4258859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 477
Target Start/End: Original strand, 3173148 - 3173448
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt |
276 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||| ||||| || |||| |||||| |||||||||| ||| || |||| |||| || | ||||| | |
|
|
| T |
3173148 |
attgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagaccagcagttgcagaat |
3173247 |
T |
|
| Q |
277 |
gatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttc |
376 |
Q |
| |
|
||||| ||| || ||||||| | || || | |||||| | ||||||||| | ||||| | || ||||||| || ||||||||| ||||| |
|
|
| T |
3173248 |
cgtgaagtttagcaaaaagttcacgaaaaaagcgatgaaagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttc |
3173347 |
T |
|
| Q |
377 |
cattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtat |
476 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||| ||| |||||||||||| | ||| ||| | ||||||||||||| || |||||||||||| |
|
|
| T |
3173348 |
cattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtat |
3173447 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
3173448 |
t |
3173448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 4503103 - 4502976
Alignment:
| Q |
350 |
gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctctt |
449 |
Q |
| |
|
||||||| || ||||||||| ||||||| ||||||| |||||||||||||||||||||| |||| ||| |||||||||||| | ||| ||| ||||| |
|
|
| T |
4503103 |
gtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctctt |
4503004 |
T |
|
| Q |
450 |
gatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||||| || ||||||||||||| |
|
|
| T |
4503003 |
gatttgagcaagcgtttgtgattgtatt |
4502976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 351 - 477
Target Start/End: Original strand, 4618620 - 4618746
Alignment:
| Q |
351 |
tcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttg |
450 |
Q |
| |
|
|||||| || ||||||||| ||||||||||| |||| ||||||||| ||| |||||||||||||||| |||||||||||| || || ||| |||||| |
|
|
| T |
4618620 |
tcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaaagcctttggacctcttg |
4618719 |
T |
|
| Q |
451 |
atttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
4618720 |
atttgagcaagcgtttgtgattgtatt |
4618746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 4517656 - 4517785
Alignment:
| Q |
348 |
atgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctc |
447 |
Q |
| |
|
||||||||| || ||||||||| |||||| || ||||||| ||||||||| || ||||||||| |||| ||| |||||||||||| | || ||| ||| |
|
|
| T |
4517656 |
atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctc |
4517755 |
T |
|
| Q |
448 |
ttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
4517756 |
ttgatttgagcaaacgtttgtgattgtatt |
4517785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 477
Target Start/End: Complemental strand, 4298481 - 4298181
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt |
276 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||| | ||| || ||| | ||| |||||||||| |||||| | || |||| || ||||||| | |
|
|
| T |
4298481 |
attgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaat |
4298382 |
T |
|
| Q |
277 |
gatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttc |
376 |
Q |
| |
|
| |||| ||| |||||||||| ||||| |||||||||||| | |||||||||| ||||| ||||||||||||| |||| |||| ||||| |
|
|
| T |
4298381 |
cacgaagtttagcaagaagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttc |
4298282 |
T |
|
| Q |
377 |
cattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtat |
476 |
Q |
| |
|
| ||||||| ||||||||||| || ||||||||| |||||| |||||||||||| || || ||| | ||||||| ||||| | |||||||||||| |
|
|
| T |
4298281 |
cgttggagtcagaccatctggaatagtctcaaagctaaagttggtgaaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtat |
4298182 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
4298181 |
t |
4298181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 4513792 - 4513662
Alignment:
| Q |
350 |
gtcttgagtagcatcacca---ttgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatct |
446 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| |||||| || || ||||||||| ||| || |||||||||||| || ||||||| || |
|
|
| T |
4513792 |
gtcttgagtagcatcaccaccatcgccatccattggagttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaaagcattaggacct |
4513693 |
T |
|
| Q |
447 |
cttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
4513692 |
cttgatttgagcaaacgtttgtgattgtatt |
4513662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 477
Target Start/End: Original strand, 4594325 - 4594455
Alignment:
| Q |
347 |
tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatct |
446 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| || ||||||||| | | ||| ||| || |
|
|
| T |
4594325 |
tatgtcttgactaacatcaccatcaccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacct |
4594424 |
T |
|
| Q |
447 |
cttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||||||||||| || |||||||||| |
|
|
| T |
4594425 |
cttgatttgagcaaacgtttatgattgtatt |
4594455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 268 - 477
Target Start/End: Original strand, 4581250 - 4581459
Alignment:
| Q |
268 |
tggcagattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcaca-agagggtatatgtcttgagtagcatcac |
366 |
Q |
| |
|
||||||| | || ||| |||| |||||||||| || ||||| ||||||||| | ||||||||| |||| |||| |||||||||||| || |||||| |
|
|
| T |
4581250 |
tggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgattgatt-cacatagagcatatatgtcttgattaacatcac |
4581348 |
T |
|
| Q |
367 |
cattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgctt |
466 |
Q |
| |
|
|| |||||| || ||||||| ||||||||| || ||||||||| |||| || |||||||||||| | || ||| |||||||||||||||| || || |
|
|
| T |
4581349 |
tatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggacctcttgatttgagcaagcgttt |
4581448 |
T |
|
| Q |
467 |
gtgattgtatt |
477 |
Q |
| |
|
||||||||||| |
|
|
| T |
4581449 |
gtgattgtatt |
4581459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 361 - 477
Target Start/End: Original strand, 4507240 - 4507356
Alignment:
| Q |
361 |
catcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaa |
460 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||| | ||| | |||||||||||||||| |
|
|
| T |
4507240 |
catcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaa |
4507339 |
T |
|
| Q |
461 |
acgcttgtgattgtatt |
477 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
4507340 |
gcgtttgtgattgtatt |
4507356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 475
Target Start/End: Original strand, 4599478 - 4599606
Alignment:
| Q |
347 |
tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatct |
446 |
Q |
| |
|
|||||| || ||| ||||||||| || || |||||||||| ||||||||| || ||||| ||| ||| ||| ||||||||| | ||||||||||| || |
|
|
| T |
4599478 |
tatgtcctgtgtaacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccattacgagaattaggacct |
4599577 |
T |
|
| Q |
447 |
cttgatttgagcaaacgcttgtgattgta |
475 |
Q |
| |
|
|||||||||||||| || ||||||||||| |
|
|
| T |
4599578 |
cttgatttgagcaagcgtttgtgattgta |
4599606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 4458754 - 4458853
Alignment:
| Q |
15 |
acatacattttttaaaacaattgattcatgcacatttctcttnnnnnnnnnnnnnnggagtatatattgttacctttgagtggtagtagaccttttcgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4458754 |
acatacattttttaaaacaattgattcatgcacatttctctt---aaaagaaaaaaggagcatatattgttacctttgagtggtagtagaccttttccaa |
4458850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 4558378 - 4558570
Alignment:
| Q |
285 |
ctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggag |
384 |
Q |
| |
|
|||| ||||||||| |||| ||||| ||||||||| | ||||||||| ||||| ||| ||||||||| || |||| |||| || ||| |||||| |
|
|
| T |
4558378 |
ctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggag |
4558477 |
T |
|
| Q |
385 |
ttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||| |||||| || || ||||||||| |||| ||| |||||||||||| | ||| ||| ||||||| |||||||| || ||||| ||||||| |
|
|
| T |
4558478 |
ttaaaccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtatt |
4558570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 4586885 - 4587077
Alignment:
| Q |
285 |
ctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggag |
384 |
Q |
| |
|
|||| ||||||||| |||| ||||| ||||||||| | ||||||||| ||||| ||| ||||||||| || ||||||||| || ||| |||||| |
|
|
| T |
4586885 |
ctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcaccatcaccatccgttggag |
4586984 |
T |
|
| Q |
385 |
ttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||| ||||||||| || ||||||||| |||| ||| | ||| |||||| | ||| ||| ||||||| || ||||| || ||||||||||||| |
|
|
| T |
4586985 |
ttaaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtatt |
4587077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 4612517 - 4612401
Alignment:
| Q |
361 |
catcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaa |
460 |
Q |
| |
|
||||||||| |||||| ||| || ||||||||||||||| | ||||||| |||| ||| |||||||| ||| | ||| ||| |||||||||||||||| |
|
|
| T |
4612517 |
catcaccatcgccttcgtttgaaggtagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaaggcatttggacctcttgatttgagcaa |
4612418 |
T |
|
| Q |
461 |
acgcttgtgattgtatt |
477 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
4612417 |
gcgtttgtgattgtatt |
4612401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 477
Target Start/End: Complemental strand, 4488978 - 4488880
Alignment:
| Q |
379 |
ttggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
||||||||| ||||||||| || ||||||||| |||| ||| | |||||||||| | ||| ||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
4488978 |
ttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtatt |
4488880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 4255622 - 4255544
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaa |
255 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||| | ||||||||||| ||||| |||||||||| | |||||| |
|
|
| T |
4255622 |
attgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaactagtggaa |
4255544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 477
Target Start/End: Original strand, 4603450 - 4603555
Alignment:
| Q |
372 |
ccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgat |
471 |
Q |
| |
|
|||||||| || ||||| |||||||| || || |||||| |||| ||| |||| || || | | ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
4603450 |
ccttccatcggtgttagtccatctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtgat |
4603549 |
T |
|
| Q |
472 |
tgtatt |
477 |
Q |
| |
|
|||||| |
|
|
| T |
4603550 |
tgtatt |
4603555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 4572219 - 4572411
Alignment:
| Q |
285 |
ctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggag |
384 |
Q |
| |
|
|||| ||||||||| |||| ||||| || || ||| || ||||||||| ||||| ||| ||||||||| || |||| |||| ||| ||| |||||| |
|
|
| T |
4572219 |
ctagcaagaagttcgcggaaaggttgtagaaaattcttcctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcgccatccgttggag |
4572318 |
T |
|
| Q |
385 |
ttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|| ||||||||| || ||||||||||||| | |||||||||||| | ||| || ||||||| |||||||| || ||||||||||||| |
|
|
| T |
4572319 |
ataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtatt |
4572411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 4569423 - 4569514
Alignment:
| Q |
381 |
ggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgatt |
472 |
Q |
| |
|
||||||| ||||||||| || ||||||||| |||| ||| |||||||||||| | || ||| ||||||||||||||||| | |||||||| |
|
|
| T |
4569423 |
ggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt |
4569514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 4489208 - 4489094
Alignment:
| Q |
149 |
agatgcattgcatggagaaaagaaaaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaatt |
248 |
Q |
| |
|
||||||| | ||||| ||||||| || ||||||||||||||||||||||||||||||| ||||| | ||| | |||| ||||| |||||||||| | |
|
|
| T |
4489208 |
agatgcactacatggggaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaact |
4489109 |
T |
|
| Q |
249 |
ggtggaataaaacca |
263 |
Q |
| |
|
|| || |||| |||| |
|
|
| T |
4489108 |
ggagggataagacca |
4489094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 477
Target Start/End: Original strand, 4565348 - 4565474
Alignment:
| Q |
351 |
tcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttg |
450 |
Q |
| |
|
|||||| || ||||||||| ||||| || || |||||||||||||||||||| |||||| ||| ||| | ||||||| | | ||| ||| |||||| |
|
|
| T |
4565348 |
tcttgactaacatcaccatcaccttctatcggtgttagaccatctggtatggtttcaaagcaaaaaccacgggaaccatctaaggcatttggacctcttg |
4565447 |
T |
|
| Q |
451 |
atttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||| ||||| || || |||||||||| |
|
|
| T |
4565448 |
attttagcaatcgtttatgattgtatt |
4565474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 4483566 - 4483533
Alignment:
| Q |
445 |
ctcttgatttgagcaaacgcttgtgattgtattt |
478 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
4483566 |
ctcttgatttgagcaaacgtttgtgattgtattt |
4483533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 4503276 - 4503179
Alignment:
| Q |
177 |
attgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcaga |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||| || | ||| ||||||| |||| ||||| |||||||||| ||| || |||| |||| || ||||||| |
|
|
| T |
4503276 |
attgggagtgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtggcaga |
4503179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 84 - 477
Target Start/End: Original strand, 24104143 - 24104540
Alignment:
| Q |
84 |
ttacctttgagtggtagtagaccttttcgaatcagagtagaaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggattggga |
183 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24104143 |
ttacctttgagtggtactagacctttttgaatcagattaggatattgaaaagtacacaagaaggtagatgcattgcatggagaaaagaaaagaattggga |
24104242 |
T |
|
| Q |
184 |
gtgcatgttcttcagcagcatctatg----gtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgat |
279 |
Q |
| |
|
|||||||||||||| ||||||| || ||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24104243 |
gtgcatgttcttcaacagcatcgatcaactgtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcattggcagattgat |
24104342 |
T |
|
| Q |
280 |
gaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccat |
379 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24104343 |
gaagtctagtaagaagttcatcaaagggctgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtaacatcaccattgccttccat |
24104442 |
T |
|
| Q |
380 |
tggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
24104443 |
tggagttagaccatctggtatggtctcaaagttaaagtcattgaaaccatcaagagaattaggatctcttgattcgagcaagcgtttgtgattgtatt |
24104540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 165 - 477
Target Start/End: Original strand, 3087878 - 3088190
Alignment:
| Q |
165 |
gaaaagaaaaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccat |
264 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| | | ||||||||| ||||||||| ||| | || |||||||||| ||||||||||| |||| |
|
|
| T |
3087878 |
gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
3087977 |
T |
|
| Q |
265 |
cattggcagattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatc |
364 |
Q |
| |
|
||| |||||| | ||||| | | |||||||||| |||||||||| ||||||| | | |||||| ||||| | ||||||| || |||| |
|
|
| T |
3087978 |
catcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaagttctttccaactgattgacaaagagatgccaagtcttgactaacatc |
3088077 |
T |
|
| Q |
365 |
accattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgc |
464 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | || ||||||||| ||| ||| ||||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
3088078 |
accattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacgg |
3088177 |
T |
|
| Q |
465 |
ttgtgattgtatt |
477 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3088178 |
ttgtgattgtatt |
3088190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 84 - 369
Target Start/End: Complemental strand, 3598 - 3313
Alignment:
| Q |
84 |
ttacctttgagtggtagtagaccttttcgaatcagagtagaaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggattggga |
183 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||| ||| ||| |||| || |||| | ||||||| | | ||||| ||| | ||||||| || ||||||| |
|
|
| T |
3598 |
ttacctttgagtggtattagtcctttttgaaacagtgtacaaaagtgtaaagcagacaagaaagaacatgcactgccggtggaaaagagaacaattggga |
3499 |
T |
|
| Q |
184 |
gtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaag |
283 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||| | || | |||||||| | |||||| || |||| || ||||||| | |||||| |
|
|
| T |
3498 |
gtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcagagtcatgaag |
3399 |
T |
|
| Q |
284 |
cctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccat |
369 |
Q |
| |
|
|| ||||||||||| |||||| |||| ||| ||||| | || ||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
3398 |
tttaacaagaagttcattgaagggctgaaagaaattcgttcttatagattgaacaagagagggtatgtcttgagtaacatcaccat |
3313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 477
Target Start/End: Complemental strand, 2441 - 2134
Alignment:
| Q |
173 |
aaggattgggagtgcatgttcttcagcagcatctatggtaaaaggcatgtaacaattggaaaccaagcaagtaattggtggaataaaaccatcattggca |
272 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||| | ||||||||||| ||||| |||| ||| | ||| || |||| |||| ||||||| |
|
|
| T |
2441 |
aaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggca |
2342 |
T |
|
| Q |
273 |
gattgatgaagcctagtaagaagttcatggaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgc |
372 |
Q |
| |
|
|| | | ||| |||| ||||||||| | ||| ||||||||||| | ||||||||| ||||| | |||||||||| || ||| ||||| |
|
|
| T |
2341 |
gactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccatcat |
2242 |
T |
|
| Q |
373 |
c---ttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtg |
469 |
Q |
| |
|
| ||||| |||||||| |||||| || || ||||| ||| ||| ||| |||||||||||||| ||||||| |||||||||||||||| || || || |
|
|
| T |
2241 |
catcttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatg |
2142 |
T |
|
| Q |
470 |
attgtatt |
477 |
Q |
| |
|
|||||||| |
|
|
| T |
2141 |
attgtatt |
2134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 477
Target Start/End: Original strand, 1282785 - 1282878
Alignment:
| Q |
384 |
gttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgattgtatt |
477 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||| ||| |||||||||| || | ||| ||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
1282785 |
gttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtatt |
1282878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 477
Target Start/End: Original strand, 1087 - 1203
Alignment:
| Q |
361 |
catcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaa |
460 |
Q |
| |
|
||||||||| ||||| | ||| |||||||||||||| ||||| |||||| |||| ||| |||||||||| | | | | ||| |||||||||||||||| |
|
|
| T |
1087 |
catcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaa |
1186 |
T |
|
| Q |
461 |
acgcttgtgattgtatt |
477 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
1187 |
acgtttgtgattgtatt |
1203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 477
Target Start/End: Original strand, 1675850 - 1675966
Alignment:
| Q |
361 |
catcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaa |
460 |
Q |
| |
|
||||||||| ||||| | ||| |||||||||||||| ||||| |||||| |||| ||| |||||||||| | | | | ||| |||||||||||||||| |
|
|
| T |
1675850 |
catcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaa |
1675949 |
T |
|
| Q |
461 |
acgcttgtgattgtatt |
477 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
1675950 |
acgtttgtgattgtatt |
1675966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 477
Target Start/End: Original strand, 2165 - 2269
Alignment:
| Q |
373 |
cttccattggagttagaccatctggtatggtctcaaagttaaagtcactgaaaccatcaagagaattaggatctcttgatttgagcaaacgcttgtgatt |
472 |
Q |
| |
|
|||||| |||||||| |||||| || || ||||| ||| ||| ||| |||||||||||||| ||||||| |||||||||||||||| || || ||||| |
|
|
| T |
2165 |
cttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgatt |
2264 |
T |
|
| Q |
473 |
gtatt |
477 |
Q |
| |
|
||||| |
|
|
| T |
2265 |
gtatt |
2269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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