View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_low_7 (Length: 452)
Name: NF11840_low_7
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 305 - 437
Target Start/End: Original strand, 9411091 - 9411223
Alignment:
| Q |
305 |
tttagcagagctttttaaaatactagtaaacaaggcatccattaagcaagcagagttctctatttttggaacacaaatcaaaaccaggtggagtttttat |
404 |
Q |
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| T |
9411091 |
tttagcagagcttttcaaaatactagtaaacaaggcatccattacgcaagaagagttctctatttttggaacacaaatcaaaaccaggtggagtttttat |
9411190 |
T |
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| Q |
405 |
cttgctcaatgacggccttgaaaataccatatc |
437 |
Q |
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| T |
9411191 |
cttgctcaatgacggccttgaaaataccatatc |
9411223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 9410965 - 9411089
Alignment:
| Q |
13 |
agatcaacaacatattcaaacttcatcagtggcaatgaatgctgaca--gaataattagaatttaaacagaaaatgaaaagtacaacaaatttgtcatca |
110 |
Q |
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| T |
9410965 |
agatcaacaacatatttaaacttcatcagtggcaatgaatgctgacaaagattaattagaatttaaacagaaaatgaaaagtacaacaaatttcttataa |
9411064 |
T |
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| Q |
111 |
gtcatgaacacaaaaagatgttttc |
135 |
Q |
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| T |
9411065 |
gtcatgaacacaaaaagatgctttc |
9411089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 640724 - 640780
Alignment:
| Q |
378 |
caaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccat |
434 |
Q |
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| T |
640724 |
caaatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaataccat |
640780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 55505395 - 55505339
Alignment:
| Q |
378 |
caaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccat |
434 |
Q |
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| T |
55505395 |
caaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat |
55505339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 434
Target Start/End: Original strand, 32151057 - 32151166
Alignment:
| Q |
325 |
tactagtaaacaaggcatccattaagcaagcagagttctctatttttggaacacaaatcaaaaccaggtggagtttttatcttgctcaatgacggccttg |
424 |
Q |
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| T |
32151057 |
tactaggaaacaaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttg |
32151156 |
T |
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| Q |
425 |
aaaataccat |
434 |
Q |
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| T |
32151157 |
aaaataccat |
32151166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 43634006 - 43634062
Alignment:
| Q |
378 |
caaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccat |
434 |
Q |
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| T |
43634006 |
caaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccat |
43634062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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