View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11840_low_9 (Length: 406)
Name: NF11840_low_9
Description: NF11840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11840_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 37584484 - 37584833
Alignment:
| Q |
17 |
acaatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccag |
116 |
Q |
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| T |
37584484 |
acaatcaacaactggattacaaaaataaaattgaagaaactaattcacccaacacaacttataaaggggaaaaactactcaagagaagaaaaaacgccag |
37584583 |
T |
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| Q |
117 |
attcacatgcatgagg----gacaatagcttcttggtgttatggatcagatggtgcagccataggacaggaagaagaagcagagcatagagacaagagcg |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584584 |
attcacatgcatgagggagggacaatagcttcttggtgttatggatcagatggtgcagccataggacaggaagaagaagcagagcatagagacaagagcg |
37584683 |
T |
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| Q |
213 |
actgactcgaaagccgtaacgattccccacacaaattcatccacaatggagatgtttatgagctccgaccaccgcgttgctgataatttcaacattaccc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584684 |
actgactcgaaagccgtaacgattccccacacaaattcatccacaatggagatgtttatgagctccgaccaccgcgttgctgataatttcaacattaccc |
37584783 |
T |
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| Q |
313 |
tacggaatactgatgccattggtgaacacactgtttcaaatcaaaacgcc |
362 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37584784 |
tacggaatactgatgccattggcgaacacactgtttcaaatcaaaacgcc |
37584833 |
T |
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