View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11841_high_14 (Length: 323)
Name: NF11841_high_14
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_high_14 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 323
Target Start/End: Original strand, 1716488 - 1716761
Alignment:
| Q |
50 |
agtagaactattaagttttgaaataacataaattaaacagaca-gatattcaacttcatgtgggaaataaggagaacttatttttatctgctaatgtatt |
148 |
Q |
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| T |
1716488 |
agtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgtatt |
1716586 |
T |
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| Q |
149 |
gaaatagagtcgttttgatgagcatggaactcaagtcaaacgagtggaagatgtcaagggtatactaccagatctacatattttcattcatgaaattatc |
248 |
Q |
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| T |
1716587 |
gaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaattatc |
1716686 |
T |
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| Q |
249 |
aatgactcatttctaaaataaagctccttttatttatttttgtatagttattattatagtttgccttacataacc |
323 |
Q |
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| T |
1716687 |
attgactcatttctgaaataaagctccttttatttatttttgtatagttattattatagcttgccttacataacc |
1716761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 1738050 - 1738135
Alignment:
| Q |
212 |
actaccagatctacatattttcattcatgaaattatcaatgactcatttctaaaataaagctccttttatttatttttgtatagtt |
297 |
Q |
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| T |
1738050 |
actactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatttatttttgtttagtt |
1738135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 1737973 - 1738009
Alignment:
| Q |
45 |
gagtaagtagaactattaagttttgaaataacataaa |
81 |
Q |
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| T |
1737973 |
gagttagtagaactattaagttttgaaataacctaaa |
1738009 |
T |
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