View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11841_high_3 (Length: 528)
Name: NF11841_high_3
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 36925237 - 36925732
Alignment:
| Q |
12 |
agatggacatcaagctataatagacactatgcacacggaattcccaagcatcctatgctctttcaagcatgcctttattaccatagacaaattttctgtg |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36925237 |
agatggacttcaagctataatagacactatgcacacagaattcccaagcatcctatgctctttcaagcatgcctttattaccatagacaaattttctgtg |
36925336 |
T |
|
| Q |
112 |
accgaagctcaacacgatgaggcagccattactctttcttccaaaatttccaaagcaaacagtttcttggatgatgctcaacagagggaagcggctttaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36925337 |
accgaagctcaacacgatgaggcagccattactctttcttccaaaatttccaaagcaaacagttccttggatgatgctcaacagagggaagcggctttaa |
36925436 |
T |
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| Q |
212 |
aggaacagatcattcaattggagaaagaaataatacatcttcaagaggagaaggataaatgcattcaagaaactataggctacaaaacggagctggagaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36925437 |
aggaacagatcattcaattggagaaagaaataatacatcttcaagaggagaaggataaatgcattcaagaaactataggctacaaaactgagctggagaa |
36925536 |
T |
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| Q |
312 |
tttgaggaaagacaaaaatcaaattgtggaagatcaaatgaaagctcggcaacaaatatttgaggtcgattataaatggtctgctctacgtagtcagttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36925537 |
tttgaggaaagacaaaaatcaaattgtggaagatcaaatgaaagctcggcaacaaatatttgaggtcgattataaatggtctgctctacgtagtcagttt |
36925636 |
T |
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| Q |
412 |
cagtacaaccacattattgcaagaaattcttcttgaggatttttcgtatttattgccttttaaatggccaaatttattaagttttggtggctaaat |
507 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
36925637 |
caatacaaccacattattgcaagaaatccttcttgaggatttttcgtatttattgcattttaaatggccaaatttattaagttttggaggctaaat |
36925732 |
T |
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