View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11841_high_4 (Length: 495)
Name: NF11841_high_4
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 476
Target Start/End: Original strand, 4870159 - 4870620
Alignment:
| Q |
21 |
taatggtagtgcaataaaggaaactttttgtttaggcccccacattattcacaaactccccaaaatatcgaaaattcccctatgcatgttttattggaag |
120 |
Q |
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| T |
4870159 |
taatggtagtgcaataaaggaaattttttgtttaggcccccacattattcacaaaccccccaaaatatcgaaaattcccctatacatggtttattggaaa |
4870258 |
T |
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| Q |
121 |
tttcacaagatatgttctgatgggcgtgatgactctcacttttaaattagtaaattagcttacggaaaaatatcttccaatattaataaaattataaata |
220 |
Q |
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| T |
4870259 |
tttcacaagatatgttctgatgggcgtgatgactctcacttttaaattactaaattagcttacggaaaaatatcttccaatattaataaaattataaata |
4870358 |
T |
|
| Q |
221 |
agcctatcatatatatcttccaatgcaaaa---tatatactctacttcaacaatcacgggtgtggtcttcaatgttgtgcaacactcccataagataaca |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4870359 |
agcctatcatatatatcttccaatgcaaaatagtatatactctacttcaacaatcatgggtgtggtcttcaatgttgtgcaacactcccataagataaca |
4870458 |
T |
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| Q |
318 |
tcgacttattcaatcgtaaataagtaagtattccaatattttgatattaaatttatagagatgtttattatgttactaattttaaaacatttgtttggat |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4870459 |
tcgacttattcaatcgtaaataaggaagtattccaatatattgatattaaatttatagagatgtttattatgttactaattttaaaacatttgtttggat |
4870558 |
T |
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| Q |
418 |
ggtctggaactggaatgacacacaccgaaacccatcaac---aataacctcatttcatatcg |
476 |
Q |
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| T |
4870559 |
ggtctggaactggaatgacacacaccgaaacccatcaacaataataacctcatttcatatcg |
4870620 |
T |
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