View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11841_low_1 (Length: 1210)
Name: NF11841_low_1
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 649; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 375 - 1195
Target Start/End: Complemental strand, 18048568 - 18047739
Alignment:
| Q |
375 |
tcattgaatcaattgccgagagagacacatcaaaagttaattgatagaacagatcgcgtggcatttggcagacatagtaacgacaacaggggacaagtgg |
474 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||| |||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
18048568 |
tcattgaatcaattgctgagagagaca--tcaaaagttaattgatagaatggatctcgtggcgtttgacagacatggtaacgacaacaaggaacaagtgg |
18048471 |
T |
|
| Q |
475 |
aaacataactaaaatttaaaaagtctataatcaattaagagaatcattgaatgaatagttaatgacgcctgatctcaacacaactttttattcatatatt |
574 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| | ||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
18048470 |
aaacataactaaaattaaaaaaatttataatcaatcaggagaagcattgaatgaatagctaatgatgcctaatcccaacacaactttttattcatatatt |
18048371 |
T |
|
| Q |
575 |
tcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcatttagaatattgcaaaaatttgaatggacaaaactatt-catatttcttg |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
18048370 |
tcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcatttagaatatttcaaaaatatgaatggacaaaactatttcgcatttcttg |
18048271 |
T |
|
| Q |
674 |
tggattcaatatttatttttcataaatatcgacatacttatttctgtacgaggataactaaacaaattaaaccaa----gttctgcttaacaaaacaaat |
769 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18048270 |
tgaattcaatatttatttttcataaatatcaacatacttatttctgtacgaagataactaaacaaattaaaccaattaagttctgcttaacaaaacaaat |
18048171 |
T |
|
| Q |
770 |
tcacccaaaacttggagaattgtactgtatcaccacatgaacccattggaacaccagggcactcaatgaaatttgacccagaagtgtccacacacatgta |
869 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18048170 |
taacccaaaacttggagaattgtactgtatcaccacatgaacccattggaacaccagggcactcaatgaaatttgacccagaagtatccacacacatgta |
18048071 |
T |
|
| Q |
870 |
aacttttaaaagctgacttttaagtcctggatctctattacatactattcctggaagaaaccctgtagcttgttgtatagcatctaaaatgctgcttgtg |
969 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18048070 |
aacttttaaaagctgacttttaagtcctggatctctattacatactattcctgggagaaaccctgtagcttgttgtatagcatctaaaatgctgcttgtg |
18047971 |
T |
|
| Q |
970 |
tcgtaaaatttatcatctggttcaatccctggtaatcatagcaaatgaatgatcagaaattttgcaaatatatcttacttttgcgtgtccagtgtctgat |
1069 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047970 |
tcgtaaaatttatcatctggttcaatccctggtaatcatagcaaatgaatgatcagaaattttgcaaatatatcttacttttgcgtgtccagtgtctgat |
18047871 |
T |
|
| Q |
1070 |
gtaactacacttaattacttccatttttaagaaattattgtcatcaacatatgtca------gtgttgtgtttcatgttcgtgtataagtaagtgtttca |
1163 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047870 |
gtaattacacttaattacttccatttttaagaaattattgtcatcaacatatgtcagtgtcagtgttgtgtttcatgttcgtgtataagtaagtgtttca |
18047771 |
T |
|
| Q |
1164 |
tgacgcattagatggttcaaaaatatgttgtt |
1195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
18047770 |
tgactcattagatggttcaaaaatatgttgtt |
18047739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18049211 - 18048972
Alignment:
| Q |
1 |
gattcaccatt-ggagagcattggaggtttggattcaagctttgcatgattttccctttatattcttcatcattgtgttggttatgttcaccatggataa |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18049211 |
gattcaccatttggagagcattggaggtttggattcaagctttgcatgattttccctttatattcttcatcattgtgttggttatgttcaccatggataa |
18049112 |
T |
|
| Q |
100 |
ctaactctctttgtgtcgggattaaaattagttagctggtatttcaatgtaaaacttttggtatgcctgattatatataatcgatctttcgttacgttga |
199 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
18049111 |
ccaactctatttgtgtcaggattaaaattagttagctaggatttcaatgtaaaactattggtatatctgattatatataatcgatcttttgttattttga |
18049012 |
T |
|
| Q |
200 |
tgattaatttatgttcttaatgttttttcagacgtgcatt |
239 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||| |||||| |
|
|
| T |
18049011 |
tgattaattcatgtttttaatgttttttccgacatgcatt |
18048972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 735 - 1042
Target Start/End: Complemental strand, 18035882 - 18035574
Alignment:
| Q |
735 |
acaaattaaaccaagttctgcttaacaaaacaaattcacccaaaacttggagaattgtactgtatcaccacatgaacccattggaacaccagggcactca |
834 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||| | ||||||||| ||||||||| || | |||| ||||||||||| ||||||||||||| |
|
|
| T |
18035882 |
acaaatcaaaccatgttctacttaacaaaacaaattctcttaaaacttggggaattgtacattagcgtcacagctacccattggaagaccagggcactca |
18035783 |
T |
|
| Q |
835 |
atgaaatttgacccagaagtgtccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctggaagaaaccctg |
934 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||| ||||||| || || || ||| |||||||||||| |||||||||| | |||||| |
|
|
| T |
18035782 |
atgaattttgacccagaaatgtccgcacacatgtaaacttgataaagctggctgtttcgtgctgaatctctattacactctattcctggtgaataccctg |
18035683 |
T |
|
| Q |
935 |
tagcttgttgtatagcatctaaaatgctgcttgtgtcgtaaaatttatcatctggttcaatccctggtaatcatagcaaatgaatgatcagaaa-ttttg |
1033 |
Q |
| |
|
|||| |||||||||||||||||||| | | ||||| ||||||||| | |||||||||||| |||| | ||| |||| | |||||| ||||| ||||| |
|
|
| T |
18035682 |
tagcctgttgtatagcatctaaaatattacctgtgttgtaaaatttgttatctggttcaatacctgaaattcaatgcaattaaatgattagaaacttttg |
18035583 |
T |
|
| Q |
1034 |
caaatatat |
1042 |
Q |
| |
|
||||||||| |
|
|
| T |
18035582 |
caaatatat |
18035574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 18048959 - 18048876
Alignment:
| Q |
275 |
atcaactttttatctgagatttacaataaactcctttgtggatgctagttgctagacatagggctaactttacaattacataca |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18048959 |
atcaactttttatctgagatttacggtaaacacttttgaggatgctagttgctagacataggactaactttacaattacataca |
18048876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 735 - 923
Target Start/End: Complemental strand, 18029859 - 18029671
Alignment:
| Q |
735 |
acaaattaaaccaagttctgcttaacaaaacaaattcacccaaaacttggagaattgtactgtatcaccacatgaacccattggaacaccagggcactca |
834 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||| | |||| |||| |||||| | | ||||||||| || | |||||| ||| |||||| |
|
|
| T |
18029859 |
acaaattaaaccatgttctctttaacaaaataaattctcttaaaatttggggaattgaatttgttcaccacatctactccttggaagcaaaggacactca |
18029760 |
T |
|
| Q |
835 |
atgaaatttgacccagaagtgtccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctgg |
923 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || || ||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
18029759 |
atgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttggctgttacgtgctgaatctctattacattctattcctgg |
18029671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 825 - 938
Target Start/End: Complemental strand, 18053026 - 18052913
Alignment:
| Q |
825 |
agggcactcaatgaaatttgacccagaagtgtccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctgga |
924 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||| |||| ||| | ||| ||||||||||||| | |||||||| |
|
|
| T |
18053026 |
agggcactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctggg |
18052927 |
T |
|
| Q |
925 |
agaaaccctgtagc |
938 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18052926 |
agaaaccctgtagc |
18052913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 19461990 - 19462091
Alignment:
| Q |
2 |
attcaccattggagagcattggaggtttggattcaagctttgcatgattttccctttatattcttcatcattgtgttggttatgttcaccatggataact |
101 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||| |||| |||||| |||| || |||||| | ||||||| || ||| | ||||||||||||| |
|
|
| T |
19461990 |
attcaccattggtgagcattagaggttttgattcaagatttgaatgattctcccattcatttcttctt--ttgtgttagtaatgcttaccatggataact |
19462087 |
T |
|
| Q |
102 |
aact |
105 |
Q |
| |
|
|||| |
|
|
| T |
19462088 |
aact |
19462091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 824 - 874
Target Start/End: Complemental strand, 18007198 - 18007148
Alignment:
| Q |
824 |
cagggcactcaatgaaatttgacccagaagtgtccacacacatgtaaactt |
874 |
Q |
| |
|
||||||| |||||||| | ||| ||||||||||||||||||| |||||||| |
|
|
| T |
18007198 |
cagggcagtcaatgaagtctgatccagaagtgtccacacacaagtaaactt |
18007148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 519 - 640
Target Start/End: Complemental strand, 30290197 - 30290075
Alignment:
| Q |
519 |
cattgaatgaatagttaatgacgcctgatctcaacacaactttttattcatatatttc-aactctttttataatatgtgtctaaaacaatcttttcttaa |
617 |
Q |
| |
|
|||||||||| ||| |||||| | | ||| || || ||||||||||| |||||||| ||||||||||| | ||||| ||||||||| |||||||||| |
|
|
| T |
30290197 |
cattgaatgattaggtaatgatgtataatcccatcataactttttatttatatattttgaactctttttacagtatgttactaaaacaaccttttcttaa |
30290098 |
T |
|
| Q |
618 |
actttcatttagaatattgcaaa |
640 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
30290097 |
acgttgatttagaatattgcaaa |
30290075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 32460144 - 32460236
Alignment:
| Q |
197 |
tgatgattaatttatgttcttaatgttttttcagacgtgcattccgaaaaatgat-ttttgatttagaaagtttgagcgatcaactttttatct |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||| | || |||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
32460144 |
tgatgatttgtttatgttcttaatgttttttccgacatgcaattcg-aaaatgatattttgatttagaaagtgcaagacatcaactttttatct |
32460236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 471 - 577
Target Start/End: Complemental strand, 31222867 - 31222760
Alignment:
| Q |
471 |
gtggaaacataactaaaatttaaaaagtctataatcaattaagagaat-cattgaatgaatagttaatgacgcctgatctcaacacaactttttattcat |
569 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| ||||||||| | |||||||||| || ||| |||| | ||| |||||||||||||||||||| |
|
|
| T |
31222867 |
gtggaaacataactaaaatatagaaagtaagtaatcgattaagagagttcattgaatgattatctaacgacgtttaatcccaacacaactttttattcat |
31222768 |
T |
|
| Q |
570 |
atatttca |
577 |
Q |
| |
|
||||||| |
|
|
| T |
31222767 |
ttatttca |
31222760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 573 - 641
Target Start/End: Complemental strand, 18374495 - 18374427
Alignment:
| Q |
573 |
tttcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcatttagaatattgcaaaa |
641 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
18374495 |
tttcaactctttttacaatatgttattaaaacaactttttcttaaacttagatttagaataatgcaaaa |
18374427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University