View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11841_low_11 (Length: 354)

Name: NF11841_low_11
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11841_low_11
NF11841_low_11
[»] scaffold0477 (2 HSPs)
scaffold0477 (106-328)||(2149-2371)
scaffold0477 (1-111)||(1067-1171)
[»] chr6 (2 HSPs)
chr6 (106-328)||(4651132-4651354)
chr6 (1-111)||(4650050-4650154)
[»] chr4 (3 HSPs)
chr4 (106-328)||(36757904-36758126)
chr4 (54-111)||(47503648-47503705)
chr4 (70-111)||(28336564-28336605)
[»] chr5 (3 HSPs)
chr5 (106-336)||(19082740-19082970)
chr5 (277-332)||(6531859-6531914)
chr5 (146-200)||(6531916-6531970)
[»] chr2 (1 HSPs)
chr2 (106-328)||(16148524-16148746)
[»] chr3 (2 HSPs)
chr3 (106-328)||(40109047-40109269)
chr3 (28-111)||(11483846-11483929)
[»] chr1 (2 HSPs)
chr1 (106-337)||(23303306-23303537)
chr1 (4-111)||(49129959-49130066)


Alignment Details
Target: scaffold0477 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 2149 - 2371
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2149 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc 2248  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  2249 aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt 2348  T
Q  306 ggaactaaaaccaaccacatcac 328  Q
    |||||| ||||||||||||||||    
T  2349 ggaactgaaaccaaccacatcac 2371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1067 - 1171
Alignment:
Q  1 agcatttaatgagtcccc-attagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacct 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||| ||||||||| ||||    
T  1067 agcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaattgctttacct 1159  T
Q  100 aattagttttta 111  Q
    |||||| |||||    
T  1160 aattagctttta 1171  T

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Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 4651132 - 4651354
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4651132 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttatttcaactggtctttgaaatttatcacgacacc 4651231  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  4651232 aacgtaatggcaagtaacttattggaatctcaaatcaatctttatgaaggaatattgtcaatacatgacaacgaaaaataccccaaaactcaaaatgctt 4651331  T
Q  306 ggaactaaaaccaaccacatcac 328  Q
    |||||| ||||||||||||||||    
T  4651332 ggaactgaaaccaaccacatcac 4651354  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4650050 - 4650154
Alignment:
Q  1 agcatttaatgagtcccc-attagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacct 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||| ||||||||| ||||    
T  4650050 agcatttaatgagtcccccattagcttgcaaagcactctttggttaagtactttagagggaaattagca-------tagggctaaacaattgctttacct 4650142  T
Q  100 aattagttttta 111  Q
    |||||| |||||    
T  4650143 aattagctttta 4650154  T

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Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 36757904 - 36758126
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  36757904 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 36758003  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36758004 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 36758103  T
Q  306 ggaactaaaaccaaccacatcac 328  Q
    | ||||| |||||||||||||||    
T  36758104 gcaactacaaccaaccacatcac 36758126  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 47503705 - 47503648
Alignment:
Q  54 ggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta 111  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||    
T  47503705 ggagggaaattatcatagcaattagggttaagcaattgcttgacttaattagctttta 47503648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 28336564 - 28336605
Alignment:
Q  70 agcaattagggctaagcaattgcttgacctaattagttttta 111  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  28336564 agcaattagggttaagcaattgcttgacctaattagctttta 28336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 106 - 336
Target Start/End: Original strand, 19082740 - 19082970
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  19082740 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 19082839  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19082840 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 19082939  T
Q  306 ggaactaaaaccaaccacatcacaatcacat 336  Q
    | ||||| ||| ||| ||||||| |||||||    
T  19082940 gcaactacaactaacaacatcaccatcacat 19082970  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 6531914 - 6531859
Alignment:
Q  277 caaagaataccccaaaactcaaaatgcttggaactaaaaccaaccacatcacaatc 332  Q
    ||||||||||||||||||||||||||||   ||||| ||||||| |||||||||||    
T  6531914 caaagaataccccaaaactcaaaatgctcacaactacaaccaacaacatcacaatc 6531859  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 6531970 - 6531916
Alignment:
Q  146 gtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacg 200  Q
    ||||| ||||||||||||| | ||||||||  |||||||||||||||| ||||||    
T  6531970 gtcctacttcactaagcatgacatttactttgactggtctttgaaattcatcacg 6531916  T

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Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 16148524 - 16148746
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    |||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  16148524 tttttaattaagtccactgtattctccacattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 16148623  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16148624 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 16148723  T
Q  306 ggaactaaaaccaaccacatcac 328  Q
    | ||||| |||||||||||||||    
T  16148724 gcaactacaaccaaccacatcac 16148746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 40109047 - 40109269
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  40109047 tttttaattaagtctactgtattctccacattctcaataggttctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 40109146  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40109147 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaaagaatattgtcaatacatgacgacaaagaataccccaaaactcaaagtgctt 40109246  T
Q  306 ggaactaaaaccaaccacatcac 328  Q
    | | ||| |||||||||||||||    
T  40109247 gcagctacaaccaaccacatcac 40109269  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 11483846 - 11483929
Alignment:
Q  28 caaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagttttta 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11483846 caaaacactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaattagctttta 11483929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 106 - 337
Target Start/End: Complemental strand, 23303537 - 23303306
Alignment:
Q  106 tttttaattaagtctactacattctccacattctcaataggtcctccttcactaagcatcatatttacttcaactggtctttgaaatttatcacgacacc 205  Q
    ||||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23303537 tttttaattaagtctactgtattctccatattctcaataggccctccttcactaagcatcatatttacttcaaccggtctttgaaattcatcacgacacc 23303438  T
Q  206 aacgtaatggcaagtaacttataggaatctcgaatcaatctttatgaaggaatattgtcaatacatgacgacaaagaataccccaaaactcaaaatgctt 305  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  23303437 aacgtaatggcaagtaacttgttggaatctcaaaacaatctttatgaatgaatattgtcaatacatgatgacaaagaataccccaaaactcaaagtgctt 23303338  T
Q  306 ggaactaaaaccaaccacatcacaatcacatt 337  Q
    | | ||| ||| ||| ||||||| ||| ||||    
T  23303337 gcatctacaactaactacatcaccatctcatt 23303306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 49129959 - 49130066
Alignment:
Q  4 atttaatgagtccccattagcttgcaaagcactctttggttaagtactttggagggaaattagcatagcaattagggctaagcaattgcttgacctaatt 103  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||  || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49129959 atttaatgagttcccattagcttgcaatgcactctttggtttagtgtttaggagggaaattagcatagtaattagggctaagcaattgcttgacctaatt 49130058  T
Q  104 agttttta 111  Q
    || |||||    
T  49130059 agctttta 49130066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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