View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11841_low_14 (Length: 330)

Name: NF11841_low_14
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11841_low_14
NF11841_low_14
[»] chr5 (5 HSPs)
chr5 (1-113)||(39590975-39591087)
chr5 (193-314)||(39591169-39591290)
chr5 (200-298)||(6074625-6074723)
chr5 (257-302)||(2415584-2415629)
chr5 (225-305)||(8957358-8957438)
[»] chr8 (5 HSPs)
chr8 (1-81)||(25931466-25931547)
chr8 (200-305)||(32061921-32062026)
chr8 (200-305)||(11298642-11298747)
chr8 (193-305)||(27534294-27534406)
chr8 (200-298)||(14327606-14327704)
[»] chr7 (4 HSPs)
chr7 (223-288)||(27706488-27706553)
chr7 (200-295)||(32312694-32312789)
chr7 (259-298)||(23732282-23732321)
chr7 (200-305)||(34594404-34594509)
[»] chr6 (1 HSPs)
chr6 (7-88)||(34785779-34785861)
[»] chr1 (2 HSPs)
chr1 (200-302)||(29067176-29067278)
chr1 (202-298)||(11121105-11121201)
[»] chr4 (1 HSPs)
chr4 (225-302)||(23963833-23963910)
[»] chr3 (1 HSPs)
chr3 (225-298)||(22844204-22844277)
[»] chr2 (2 HSPs)
chr2 (193-274)||(8064700-8064781)
chr2 (193-305)||(3397861-3397973)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 39590975 - 39591087
Alignment:
Q  1 cccactgcacgtctacaagaagcaacaattttgagcttcttaaaattcacgtttaatatgcctaggacgcgataatatgttgctaaactccaatccaaac 100  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39590975 cccaccgcatgtctacaagaagcaacaattttgagcttcttaaaattcacgtttaatatgcttaggacgcgataatatgttgctaaactccaatccaaac 39591074  T
Q  101 aaatactaaatcg 113  Q
    |||||||||||||    
T  39591075 aaatactaaatcg 39591087  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 39591169 - 39591290
Alignment:
Q  193 gacattattttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagt 292  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  39591169 gacattattttgtttgtcatctttgtgtagtgttgtttgtctttcccatctttttcaagtgtttgttcagttcatattgtcaaattagcttcgatcaagt 39591268  T
Q  293 gcagattcaaccatgattttga 314  Q
    ||||||  ||||||||||||||    
T  39591269 gcagatctaaccatgattttga 39591290  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 6074723 - 6074625
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    ||||||||||| ||||||||     ||||||||||||  | |||| |||||||||| |||||||||| ||||||| || | |||||||| |||| ||||    
T  6074723 ttttgtttgtcgtctttgtgcgaccttgtttgtcttttccctcttgttcaagtgtttgttcggttcagattgtcagatcaacttcgatccagtgtagat 6074625  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 2415584 - 2415629
Alignment:
Q  257 gttcggttcatattgtcaaattagcttcgatcaagtgcagattcaa 302  Q
    |||||||||| ||||||| || |||||||||| |||||||||||||    
T  2415584 gttcggttcagattgtcagatcagcttcgatccagtgcagattcaa 2415629  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 8957358 - 8957438
Alignment:
Q  225 ttgtttgtcttt-ctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagattcaacca 305  Q
    |||||||||||| ||| |||| |||| ||||| |||| ||||| ||||||| || |||||||||| | ||||||||||||||    
T  8957358 ttgtttgtcttttctc-tcttgttcaggtgtttgttcagttcagattgtcagatcagcttcgatccaatgcagattcaacca 8957438  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25931466 - 25931547
Alignment:
Q  1 cccactgcacgtctacaagaagcaacaattttgagcttcttaaaattcacgtttaatatgccta-ggacgcgataatatgtt 81  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||    
T  25931466 cccaccgcacttctacaagaagtaacaattttgagcttcttaaatttcacgttcaatatgcctagggacgcaataatatgtt 25931547  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 32061921 - 32062026
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagatt 299  Q
    ||||||||||| ||||||||    |||||||||||||  | |||| |||| ||||| |||||||||| ||||||| || ||||||||||||||||||||     
T  32061921 ttttgtttgtcgtctttgtgcgacattgtttgtcttttccctcttgttcaggtgtttgttcggttcagattgtcagatcagcttcgatcaagtgcagatc 32062020  T
Q  300 caacca 305  Q
    ||||||    
T  32062021 caacca 32062026  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 11298747 - 11298642
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagatt 299  Q
    ||||||||||| ||||||||  |  ||||||||||||  | |||| |||| ||||| |||||| ||| ||||||| |||||||| |||| |||||||||     
T  11298747 ttttgtttgtcgtctttgtgcggcgttgtttgtcttttccctcttgttcaggtgtttgttcggatcagattgtcagattagctttgatccagtgcagatc 11298648  T
Q  300 caacca 305  Q
    ||||||    
T  11298647 caacca 11298642  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 27534406 - 27534294
Alignment:
Q  193 gacattattttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagt 292  Q
    |||||| ||||||||||| ||||||||  |  |||||||| |||  | |||| || | ||||| |||| | ||| ||||||| ||||||||||||| |||    
T  27534406 gacattgttttgtttgtcgtctttgtgcggcgttgtttgtgttttccctcttgtttaggtgtttgttcagatcagattgtcagattagcttcgatccagt 27534307  T
Q  293 gcagattcaacca 305  Q
    |||||| ||||||    
T  27534306 gcagatccaacca 27534294  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 14327606 - 14327704
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    ||||||||||| ||||||||     ||||||||||||  | | || |||||||||| |||||||||| ||||||| || |||||||||  |||||||||    
T  14327606 ttttgtttgtcgtctttgtgcgacgttgtttgtcttttcccttttgttcaagtgtttgttcggttcagattgtcagatcagcttcgatacagtgcagat 14327704  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 27706553 - 27706488
Alignment:
Q  223 tattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatc 288  Q
    |||||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||    
T  27706553 tattgtttgtctttctcatcttgttcaagtgtttgttcgattcagattgtcaaatcagcttcgatc 27706488  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 32312694 - 32312789
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgca 295  Q
    ||||||| ||| |||||||| | | ||||| |||||||||||||| |||| ||||| ||| | |||||||||||| || |||||||||||||||||    
T  32312694 ttttgttcgtcgtctttgtgcaatgttgttagtctttctcatcttgttcatgtgtttgtttgattcatattgtcatatcagcttcgatcaagtgca 32312789  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 23732321 - 23732282
Alignment:
Q  259 tcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  23732321 tcggttcagattgtcaaattagcttcgatccagtgcagat 23732282  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 34594509 - 34594404
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtc-tttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    ||||||||||| ||||||||    |||||||||| |||||| |||| |||||||||| |||| ||||| ||| ||| || |||||| ||| |||||||||    
T  34594509 ttttgtttgtcgtctttgtgcgacattgtttgtcttttctc-tcttgttcaagtgtttgttcagttcaaattatcatatcagcttcaatctagtgcagat 34594411  T
Q  299 tcaacca 305  Q
     ||||||    
T  34594410 ccaacca 34594404  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 34785779 - 34785861
Alignment:
Q  7 gcacgtctacaagaagcaacaattttgagcttcttaaaattcacgtttaatatgccta-ggacgcgataatatgttgctaaac 88  Q
    |||||||||||||||||| ||||||| ||||| | |||| ||||||| |||||||||| ||||| || |||||||| ||||||    
T  34785779 gcacgtctacaagaagcagcaatttttagcttataaaaaatcacgttcaatatgcctagggacgtgagaatatgttactaaac 34785861  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 29067176 - 29067278
Alignment:
Q  200 ttttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagatt 299  Q
    ||||||| ||| |||||||| ||  ||||||||||||||  | || ||||||| ||  ||||||||| ||| ||| || ||||||||||||||||| |||    
T  29067176 ttttgttcgtcgtctttgtgcagcgttgtttgtctttcttgttttgttcaagtatttattcggttcaaattttcagatcagcttcgatcaagtgcaaatt 29067275  T
Q  300 caa 302  Q
    |||    
T  29067276 caa 29067278  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 11121105 - 11121201
Alignment:
Q  202 ttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    ||||| |||||||||||| |   ||||||||||||||  | || |||| || || |||||||||| ||||||| || |||||||||| |||||||||    
T  11121105 ttgttcgtcatctttgtgcaacgttgtttgtctttcttgttttgttcatgtatttgttcggttcagattgtcagatcagcttcgatccagtgcagat 11121201  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 23963833 - 23963910
Alignment:
Q  225 ttgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagattcaa 302  Q
    ||||||||| |||||||||| ||||  |||| |||||||||||||| ||| || | |||||||| | |||||||||||    
T  23963833 ttgtttgtcattctcatcttgttcagatgtttgttcggttcatattatcatatcaacttcgatccaatgcagattcaa 23963910  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 22844204 - 22844277
Alignment:
Q  225 ttgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagtgcagat 298  Q
    ||||||||||||||  | || |||| || || |||||||||| ||||||| || | ||||||||||||||||||    
T  22844204 ttgtttgtctttcttgttttgttcaggtatttgttcggttcagattgtcagatcaacttcgatcaagtgcagat 22844277  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 8064781 - 8064700
Alignment:
Q  193 gacattattttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtca 274  Q
    |||||| ||||||||||| | ||||||   ||||||||||||||| |||||| | |||||||| |||  ||||| |||||||    
T  8064781 gacattgttttgtttgtcgtttttgtgcgatattgtttgtctttcccatcttgtccaagtgtttgtttagttcaaattgtca 8064700  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 3397973 - 3397861
Alignment:
Q  193 gacattattttgtttgtcatctttgtgtagtattgtttgtctttctcatctttttcaagtgttcgttcggttcatattgtcaaattagcttcgatcaagt 292  Q
    |||||| |||||| |||||||||||||     |||||| |||||  | |||| |||| ||||| ||||  |||| ||||||| || | |||||||| |||    
T  3397973 gacattgttttgtctgtcatctttgtgcgactttgtttatcttttccctcttgttcaggtgtttgttcaattcagattgtcagatcatcttcgatccagt 3397874  T
Q  293 gcagattcaacca 305  Q
    |||||||||||||    
T  3397873 gcagattcaacca 3397861  T

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