View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11841_low_16 (Length: 312)
Name: NF11841_low_16
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 38743939 - 38744235
Alignment:
| Q |
11 |
atggacatcaacttttgttggctcatcaaatcactaaaaatagattagtggcgccattttatgaagtaatatatcattacaacaaatcacagtgacacca |
110 |
Q |
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| T |
38743939 |
atggacatcaacttttgttggctcatcaaatcactaaaaatagattagtggcgccattttatgaagtaatatatcattacaacaaatcatagtgacacca |
38744038 |
T |
|
| Q |
111 |
tcactac--nnnnnnnnnnnnctcataatgacatcatagtaccaagtttccagttataccataataacacaggtgttagaaannnnnnnagtaaaaaatt |
208 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38744039 |
tcactaccaaaaaaaaaaaaactcataatgacatcatagtaccaagtttccagttataccataataacacaggtgttagaaa-ttttttagtaaaaaatt |
38744137 |
T |
|
| Q |
209 |
cttaacaaactttccataattcacgtgtgcatgaaacttgtacatttcttagatacatnnnnnnntatctacaatacgtgcttaattgatatactctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38744138 |
cttaacaaactttccataattcacgtgtgcatgaaacttgtacatttcttagatacataaaaaaatatctacaatacgtgcttaattgatatactctg |
38744235 |
T |
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