View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11841_low_19 (Length: 266)

Name: NF11841_low_19
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11841_low_19
NF11841_low_19
[»] chr2 (6 HSPs)
chr2 (23-189)||(36338849-36339032)
chr2 (21-108)||(27648486-27648573)
chr2 (190-256)||(36339130-36339193)
chr2 (107-147)||(44686164-44686204)
chr2 (150-184)||(27648394-27648428)
chr2 (150-184)||(44686218-44686252)
[»] chr6 (1 HSPs)
chr6 (15-135)||(353107-353234)
[»] chr3 (3 HSPs)
chr3 (15-141)||(53837435-53837568)
chr3 (15-110)||(53833837-53833932)
chr3 (150-185)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (25-110)||(47833942-47834027)
[»] chr5 (3 HSPs)
chr5 (24-111)||(33827629-33827716)
chr5 (15-58)||(23755661-23755704)
chr5 (15-58)||(23821117-23821160)
[»] chr4 (1 HSPs)
chr4 (56-111)||(54572992-54573047)
[»] chr7 (2 HSPs)
chr7 (150-185)||(4648283-4648318)
chr7 (153-185)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 36338849 - 36339032
Alignment:
Q  23 caagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac------cgggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      | ||     
T  36338849 caagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggt 36338948  T
Q  117 ttaagagtatttcgccacctcggataggttac----tg-------tctcatagctagtactctccaggatacaacagtcagttc 189  Q
    ||||||||||||||||| |||| |||||||||    ||       |||| | ||||||||||||||||||||||||||||||||    
T  36338949 ttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttc 36339032  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 27648573 - 27648486
Alignment:
Q  21 aacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtg 108  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| | ||||||||||||||||    
T  27648573 aacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgattattgattgaggcgtg 27648486  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 36339130 - 36339193
Alignment:
Q  190 aagaagagatgaaagcatctaacaagtttgttctctctcaatgtaacttacgtatccctatgcttct 256  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||    
T  36339130 aagaagagatgaaagcatctaacaa---tgttctctctcaatgtaacttacgtatccctattcttct 36339193  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 44686164 - 44686204
Alignment:
Q  107 tgcaccgggcttaagagtatttcgccacctcggataggtta 147  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  44686164 tgcactgggcttaagagtatttcgccacctcggataagtta 44686204  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 27648428 - 27648394
Alignment:
Q  150 gtctcatagctagtactctccaggatacaacagtc 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  27648428 gtctcatagctaatactctccaggatacaacagtc 27648394  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 44686218 - 44686252
Alignment:
Q  150 gtctcatagctagtactctccaggatacaacagtc 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  44686218 gtctcatagctaatactctccaggatacaacagtc 44686252  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 353234 - 353107
Alignment:
Q  15 ataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgt------- 107  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| | |||||| ||||||||           
T  353234 ataaacaacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgattattgactgaggcgtgcacgaa 353135  T
Q  108 gcaccgggcttaagagtatttcgccacc 135  Q
    |||| |||||||||||||||||||||||    
T  353134 gcactgggcttaagagtatttcgccacc 353107  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 53837435 - 53837568
Alignment:
Q  15 ataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgc----- 109  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| | |||||| ||||||||||         
T  53837435 ataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgattattgactgaggcgtgcatgaa 53837534  T
Q  110 --accgggcttaagagtatttcgccacctcggat 141  Q
      |  |||||||||||||||||||||||||||||    
T  53837535 gtattgggcttaagagtatttcgccacctcggat 53837568  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 53833837 - 53833932
Alignment:
Q  15 ataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgca 110  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||| |||| ||||||||| |  |||||||||| | ||||| ||||||||||||    
T  53833837 ataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgattattggttgaggcgtgca 53833932  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 24734349 - 24734384
Alignment:
Q  150 gtctcatagctagtactctccaggatacaacagtca 185  Q
    |||||||||||| |||||||||||||||||||||||    
T  24734349 gtctcatagctaatactctccaggatacaacagtca 24734384  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 47834027 - 47833942
Alignment:
Q  25 agaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgca 110  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| | |||||| |||||| ||||    
T  47834027 agaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgattattgactgaggcatgca 47833942  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 33827716 - 33827629
Alignment:
Q  24 aagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 111  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||    ||||| ||||||||||||    
T  33827716 aagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaatttatcggtcattgactgaggcgtgcac 33827629  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 23755661 - 23755704
Alignment:
Q  15 ataaacaacaagaattattagcatcaaattaatagaactctaaa 58  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  23755661 ataaacaacaagaattatcagtatcaaattaatacaactctaaa 23755704  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 23821117 - 23821160
Alignment:
Q  15 ataaacaacaagaattattagcatcaaattaatagaactctaaa 58  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  23821117 ataaacaacaagaattatcagtatcaaattaatacaactctaaa 23821160  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 54573047 - 54572992
Alignment:
Q  56 aaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 111  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcac 54572992  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 4648283 - 4648318
Alignment:
Q  150 gtctcatagctagtactctccaggatacaacagtca 185  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4648283 gtctcatagctagtactcttcaggatacaacagtca 4648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 38787145 - 38787113
Alignment:
Q  153 tcatagctagtactctccaggatacaacagtca 185  Q
    |||||| ||||||||||||||||||||||||||    
T  38787145 tcatagttagtactctccaggatacaacagtca 38787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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