View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11841_low_2 (Length: 782)
Name: NF11841_low_2
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 726; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 1 - 767
Target Start/End: Original strand, 7636135 - 7636901
Alignment:
| Q |
1 |
aaaaaacctaaatttcatggatgatttagttnnnnnnnttaggaacaaaaataccaataaggatgagtcaataccataagcacagctttgatgtggtcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636135 |
aaaaaacctaaatttcatggatgatttagttaaaaaatttaggaacaaaaataccaataaggatgagtcaataccataagcacagctttgatgtggtcaa |
7636234 |
T |
|
| Q |
101 |
gagtgagatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636235 |
gagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaatt |
7636334 |
T |
|
| Q |
201 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaaccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636335 |
atccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaaccc |
7636434 |
T |
|
| Q |
301 |
aacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7636435 |
aacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcttttgtccacttcccaatt |
7636534 |
T |
|
| Q |
401 |
caacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636535 |
caacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacc |
7636634 |
T |
|
| Q |
501 |
tttttcatcaccaccatattgcgacaacttttgaatcaatttggccacttcattttctctaacgggcctaaaagaatggacacgttgagagctaaagagg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636635 |
tttttcatcaccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatggacacgttgagagctaaagaga |
7636734 |
T |
|
| Q |
601 |
tgatgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaagcaagatctaaaccattgtaagacaattttcttagtcctaggaaag |
700 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636735 |
tgttgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaagcaagatctaaaccattgtaagacaattttcttagtcctaggaaag |
7636834 |
T |
|
| Q |
701 |
atggtctacttgcaaatttaaggtcatgggttttcaacacttgttctgccatttttgctgaggaaac |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7636835 |
atggtctacttgcaaatttaaggtcatgggttttcaacacttgttctgccatttttgctgaggaaac |
7636901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 56 - 767
Target Start/End: Original strand, 7629407 - 7630118
Alignment:
| Q |
56 |
aataaggatgagtcaataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaat |
155 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |
|
|
| T |
7629407 |
aataaggacgagtccataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaat |
7629506 |
T |
|
| Q |
156 |
aatatcatctacttcttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgtt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7629507 |
aatatcatctacttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgtt |
7629606 |
T |
|
| Q |
256 |
ttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
355 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7629607 |
ttatcaagcctcccaagtgttcctttgactctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
7629706 |
T |
|
| Q |
356 |
taagcaaaacttgcaatctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatat |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7629707 |
taagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactccttcttcataatcacaaacatatgttttcccaaaagctatcttacatat |
7629806 |
T |
|
| Q |
456 |
aattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaatttggccacttcattt |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7629807 |
aattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaattgggccacttcattt |
7629906 |
T |
|
| Q |
556 |
tctctaacgggcctaaaagaatggacacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaag |
655 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7629907 |
tctctaacgggcctaaaagaatgggcacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcacaag |
7630006 |
T |
|
| Q |
656 |
caagatctaaaccattgtaagacaattttcttagtcctaggaaagatggtctacttgcaaatttaaggtcatgggttttcaacacttgttctgccatttt |
755 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
7630007 |
ccagatctaaaccattgtaagacaattttctaaatccaagaaaagatggtctacttgcaaatttaaggtcgtgagttttcaacacttgttctgccatttt |
7630106 |
T |
|
| Q |
756 |
tgctgaggaaac |
767 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7630107 |
tgctgaggaaac |
7630118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 71 - 767
Target Start/End: Original strand, 7623113 - 7623809
Alignment:
| Q |
71 |
ataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttc |
170 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| | ||||| |
|
|
| T |
7623113 |
ataccataagcacagctttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttc |
7623212 |
T |
|
| Q |
171 |
ttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctccca |
270 |
Q |
| |
|
||| ||||| ||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7623213 |
ttgctccttggttttaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctccca |
7623312 |
T |
|
| Q |
271 |
agagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgca |
370 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||||||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
7623313 |
agagttcctttgattctatcaacccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgca |
7623412 |
T |
|
| Q |
371 |
atctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgag |
470 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7623413 |
atctacttcttctttctccacttcccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaa |
7623512 |
T |
|
| Q |
471 |
agacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaatttggccacttcattttctctaacgggccta |
570 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
7623513 |
agatatcaatatttcactcaagtttacacctttttcatcaccatcatactgtgacagcttttgaatcaattcagccacttcattttctctaataggccta |
7623612 |
T |
|
| Q |
571 |
aaagaatggacacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaagcaagatctaaaccat |
670 |
Q |
| |
|
|||||||| | || || || ||||||||||||| || ||||||| ||| |||| ||||||||||||| ||||||||||||||| | | ||||||||||| |
|
|
| T |
7623613 |
aaagaatgtagacttttagggctaaagaggtgaagagcacaaagctttttcatatctctccaataagagctataaggtgcaaaacccaaatctaaaccat |
7623712 |
T |
|
| Q |
671 |
tgtaagacaattttcttagtcctaggaaagatggtctacttgcaaatttaaggtcatgggttttcaacacttgttctgccatttttgctgaggaaac |
767 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623713 |
tgtaagacaattttcttagtccaagaaaagatggtctacttgcaaatttaaggtcgtgagttttcaacacttgttctgccatttttgctgaggaaac |
7623809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University