View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11841_low_6 (Length: 423)

Name: NF11841_low_6
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11841_low_6
NF11841_low_6
[»] chr2 (7 HSPs)
chr2 (1-154)||(17281256-17281423)
chr2 (234-338)||(17281503-17281607)
chr2 (324-413)||(17281624-17281713)
chr2 (329-410)||(1551273-1551354)
chr2 (324-413)||(4140751-4140840)
chr2 (331-413)||(4869941-4870022)
chr2 (324-410)||(17375631-17375717)
[»] chr5 (8 HSPs)
chr5 (324-410)||(7766683-7766769)
chr5 (324-410)||(41355224-41355310)
chr5 (328-413)||(18697281-18697366)
chr5 (330-413)||(6030074-6030157)
chr5 (335-413)||(7272126-7272204)
chr5 (330-410)||(26657064-26657147)
chr5 (330-410)||(26928652-26928735)
chr5 (243-281)||(15954968-15955006)
[»] chr4 (4 HSPs)
chr4 (324-410)||(47518129-47518215)
chr4 (324-409)||(53202625-53202710)
chr4 (324-410)||(23053914-23054000)
chr4 (68-127)||(5923993-5924053)
[»] chr1 (3 HSPs)
chr1 (324-413)||(34118327-34118416)
chr1 (330-413)||(616057-616140)
chr1 (331-410)||(39708560-39708642)
[»] chr8 (1 HSPs)
chr8 (324-413)||(10409179-10409268)
[»] chr6 (2 HSPs)
chr6 (324-412)||(20740943-20741031)
chr6 (327-410)||(21881826-21881909)
[»] chr3 (2 HSPs)
chr3 (330-413)||(18269533-18269616)
chr3 (247-283)||(31708166-31708202)
[»] chr7 (1 HSPs)
chr7 (328-414)||(3302929-3303018)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 17281256 - 17281423
Alignment:
Q  1 ttcatatttattcgttattagattattcatagttgtacgtgtttagcttcacttttagaattctt---------tt-----tgtcaaaaacaattctaac 86  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||     |||||||||||||||||||    
T  17281256 ttcatattttttcgttattagattattcatagttgtacgtgtttagcttcacttttagaattcttggaagtattttacaagtgtcaaaaacaattctaac 17281355  T
Q  87 tctaaaaattatgtttagcatttttatgagaaatcaatttttgaggacataaaacaattataattgaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  17281356 tctaaaaattatgtttagcatttttatgagaaatcaatttttgaggacttaaaacaattatacttgaa 17281423  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 17281503 - 17281607
Alignment:
Q  234 cctcatctacaaatcacttttactccgaatcaattttacaaaatcaattcctttctttctttctaaacctagtggtccaatagaaaatagccgccgtact 333  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17281503 cctcatctacaaatcacttttactccgaatcaattttaagaaatcaattcctttctttctttctaaacctagtggtccaatagaaaatagccgtcgtact 17281602  T
Q  334 ccttt 338  Q
    |||||    
T  17281603 ccttt 17281607  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 17281624 - 17281713
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17281624 ccgccgtactcctttcttcctcgcataaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 17281713  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 1551273 - 1551354
Alignment:
Q  329 gtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  1551273 gtactcctttcttcctcacacaaattccaaatctgtcgtcatcatcatgtagatcaaatggatggtggtgcgacgagggtct 1551354  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 4140840 - 4140751
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    |||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  4140840 ccgccgtacttctttcttcctcacacaaattccaaatccgccgttgtcatcatgtagatcaaatggatggtggtgcaacaagggtctctg 4140751  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 4870022 - 4869941
Alignment:
Q  331 actcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    |||||||||||||||||| |||||  ||||| | || || | ||||||||||||||||||||||||||||| |||||||||||    
T  4870022 actcctttcttcctcacacaaattttaaatccgtcg-cgccgtcatgtagatcaaatggatggtggtgcgatgagggtctctg 4869941  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 17375717 - 17375631
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||||||||| | ||||||| |||||| ||||  | ||  | |||||||| |||||||||||||||||||||||||||||||    
T  17375717 ccgccgtactcctttttgcctcacacaaattctaaattcgtcgctgccatcatgtggatcaaatggatggtggtgcgacgagggtct 17375631  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 410
Target Start/End: Original strand, 7766683 - 7766769
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||    
T  7766683 ccgccgtactcctttcttcctcacacaaattccaaatccgccgccgccatcatgtagatctaatggatggtggtgcgacgagggtct 7766769  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 410
Target Start/End: Original strand, 41355224 - 41355310
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    |||| |||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  41355224 ccgcggtactcctttcttcctcacacaaattctaaatttgtcgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 41355310  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 413
Target Start/End: Complemental strand, 18697366 - 18697281
Alignment:
Q  328 cgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    ||||||||||||||||||||| ||||| |||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  18697366 cgtactcctttcttcctcacacaaatttcaaatccgccgccgccatcacgtagatcaaatggatggtggtgcgacgagggtctctg 18697281  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 6030074 - 6030157
Alignment:
Q  330 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    ||||||||||||||||||| |||||||||||  | || || |||||| |||||||||||||||||||||||| |||||||||||    
T  6030074 tactcctttcttcctcacacaaattccaaattcgtcgccgccatcatatagatcaaatggatggtggtgcgatgagggtctctg 6030157  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 7272204 - 7272126
Alignment:
Q  335 ctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    |||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||||||||| ||| |||||||||||    
T  7272204 ctttcttcctcacacaaattccaaatccgtcgtcgccgtcatgtagatcaaatggatggtggtccgatgagggtctctg 7272126  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 26657147 - 26657064
Alignment:
Q  330 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatc---atgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||   ||||||||||||||||||||||||||| || |||||    
T  26657147 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcgatgaaggtct 26657064  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 26928735 - 26928652
Alignment:
Q  330 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatc---atgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||   ||||||||||||||||||||||||||| || |||||    
T  26928735 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcgatgaaggtct 26928652  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 15955006 - 15954968
Alignment:
Q  243 caaatcacttttactccgaatcaattttacaaaatcaat 281  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  15955006 caaatcacttttaatccgattcaattttacaaaatcaat 15954968  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 410
Target Start/End: Original strand, 47518129 - 47518215
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47518129 ccgccgtacccctttctttctcacacaaattccaaatctgccgccgtcatcatgtagatcaaatggatggtggtgcgaagagggtct 47518215  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 53202710 - 53202625
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtc 409  Q
    ||||||||||||||||||||||||| |||||  ||||| |||  ||||||||||||||||||||||||||||||||||||||||||    
T  53202710 ccgccgtactcctttcttcctcacacaaattttaaatccgcccccgtcatcatgtagatcaaatggatggtggtgcgacgagggtc 53202625  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 410
Target Start/End: Original strand, 23053914 - 23054000
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||||||| |||| |||||||| |||||| |||||  ||| || ||||||||||||||| ||||||||||||||  ||||||||    
T  23053914 ccgccgtactcttttcatcctcacacaaattctaaatccaccgccgccatcatgtagatcaactggatggtggtgcggagagggtct 23054000  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 5924053 - 5923993
Alignment:
Q  68 tgtcaaaaacaattctaactcta-aaaattatgtttagcatttttatgagaaatcaatttt 127  Q
    ||||| || |||||||||||||| |||||||||||||| |||||| ||| |||| ||||||    
T  5924053 tgtcataagcaattctaactctataaaattatgtttagtatttttttgaaaaattaatttt 5923993  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 34118416 - 34118327
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    ||||||||||||||||||||||||| |||||| |||||  |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  34118416 ccgccgtactcctttcttcctcacacaaattctaaatcccccgtcggcataatgtagatcaaatagatggtggtgcgacgagggtctctg 34118327  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 413
Target Start/End: Complemental strand, 616140 - 616057
Alignment:
Q  330 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    ||||||||||||||||||| ||||||||||||  |||||| | ||||||||||||||||||||||||||||| |||||||||||    
T  616140 tactcctttcttcctcacacaaattccaaatccaccgtcgccgtcatgtagatcaaatggatggtggtgcgatgagggtctctg 616057  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 39708560 - 39708642
Alignment:
Q  331 actcctttcttcctcacagaaattccaaatctgccgtcg---tcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    |||||||||||||||||  ||||| |||||| |||| ||   || |||||||||| |||||||| ||||||| ||||||||||    
T  39708560 actcctttcttcctcacccaaatttcaaatccgccgccgccatcgtcatgtagataaaatggattgtggtgcaacgagggtct 39708642  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 10409268 - 10409179
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    |||||| |||||||| ||||||| | |||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  10409268 ccgccgcactccttttttcctcaaacaaattctaaatccgccgccgccatcatgtagatcaaatggatggtggtgcgacgagggtctctg 10409179  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 20741031 - 20740943
Alignment:
Q  324 ccgccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctct 412  Q
    |||| |||||||||||||||||||| |||||  ||||| || |  ||||||||||||||||||||||||||||||||||||||||||||    
T  20741031 ccgctgtactcctttcttcctcacacaaattttaaatccgctgctgtcatcatgtagatcaaatggatggtggtgcgacgagggtctct 20740943  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 21881909 - 21881826
Alignment:
Q  327 ccgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtct 410  Q
    ||||||| ||||||||||| || ||||| |||||||| || ||  |||||||||||||||||||||||||||||||||||||||    
T  21881909 ccgtactactttcttcctctcataaattacaaatctgtcgccgcaatcatgtagatcaaatggatggtggtgcgacgagggtct 21881826  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 18269533 - 18269616
Alignment:
Q  330 tactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgcgacgagggtctctg 413  Q
    ||||||||||| ||||||| |||||||||||| | ||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  18269533 tactcctttctccctcacacaaattccaaatccgtcgtcgccatcatgtagatcaaatgaatggtggtgcgatgagggtctctg 18269616  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 31708202 - 31708166
Alignment:
Q  247 tcacttttactccgaatcaattttacaaaatcaattc 283  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  31708202 tcacttttagtcctaatcaattttacaaaatcaattc 31708166  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 3303018 - 3302929
Alignment:
Q  328 cgtactcctttcttcctcacagaaattccaaatctgccgtcgtcatcatgtagatcaaatg---gatggtggtgcgacgagggtctctgc 414  Q
    |||||| ||||||| |||||| |||||  ||||  | || || ||||||||||||||||||   ||||||||||| ||||||||||||||    
T  3303018 cgtacttctttctttctcacacaaattttaaattcgtcgccgccatcatgtagatcaaatgacggatggtggtgcaacgagggtctctgc 3302929  T

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